Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00103 and BPUM_0046
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00103___divIC.1.24716.seq
# -bsequence dna-align/BPUM_0046___divIC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00103___divIC-BPUM_0046___divIC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00103___divIC-BPUM_0046___divIC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00103___divIC
# 2: BPUM_0046___divIC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity: 246/423 (58.2%)
# Similarity: 246/423 (58.2%)
# Gaps: 93/423 (22.0%)
# Score: 619.5
#
#
#=======================================
BSNT_00103___ 1 TTGAATTTTTCCAGGGAACGAACGATA------ACTGAAATACAAAACGA 44
||||| |.||.||| ||.||.| || ||||.|||||.||
BPUM_0046___d 1 TTGAA-----CAAGAGAA--AAAGAAATATCGCAC--AAATTCAAAATGA 41
BSNT_00103___ 45 CTATAAAGAACAAGTAGAACGGCAAAATCAGCTGAAGAAACG---AAGAC 91
.||..||.|||||.|.||||.||||...||| || ||.||
BPUM_0046___d 42 TTACCAAAAACAAATGGAACAGCAAGCACAG---------CGCTTAAAAC 82
BSNT_00103___ 92 GCAAAGGGC-TGTAC-----AGACGGTTAACTGTATTCGG------CGCC 129
|||||.|.| ||.|| |||.||.|.||.||.||.|| .||.
BPUM_0046___d 83 GCAAACGCCGTGGACTCCTTAGAAGGCTTACCGTGTTTGGTGTGATTGCG 132
BSNT_00103___ 130 CTAGTATTCCTGACGGCAATTG---TGCTGGCAAG----CTCTGTATGGT 172
||..|.|| || ||| ||.||..||| ||| ||||
BPUM_0046___d 133 CTCATGTT--TG-------TTGTCTTGGTGATAAGTGCCCTC----TGGT 169
BSNT_00103___ 173 CCCAAACATCTTCCCTTAGTGCAAAAGAAGAAAAGAAAGAACAGCTTGAA 222
|.|||.|.||.||..|.|..|.|||||||||.|||||.|....|||||||
BPUM_0046___d 170 CGCAATCGTCCTCATTAAAGGAAAAAGAAGAGAAGAAGGTTGCGCTTGAA 219
BSNT_00103___ 223 AAAGAACTGAA--AAGTTTAAAGACAAAACAAACGGATTTAAAAGAAGAA 270
||||||.|||| || |||.|.|||||.| |.|||||.
BPUM_0046___d 220 AAAGAATTGAAGCAA--TTACAAACAAAGC------------AGGAAGAT 255
BSNT_00103___ 271 ATATC----CAAATT-GAAGGATG-------AGGATTACGTCAC-AGAGC 307
||.|| .||||| .||.|.|| |.||.||||| || .||.|
BPUM_0046___d 256 ATTTCTGATGAAATTAAAAAGCTGAAAAGCAAAGAATACGT-ACTCGAAC 304
BSNT_00103___ 308 TTGCCAGAAGGGAC--TTATTCATGTCTGGAGACGGAGAAATTATCTTCA 355
|.||..||.||||| |||| |||||...|.|.||.||||..|||||..
BPUM_0046___d 305 TGGCACGACGGGACTATTAT--ATGTCCAAAAAAGGCGAAAAAATCTTTG 352
BSNT_00103___ 356 ATGTGGAGAAGAAGAGCAAGTAG 378
||||||..||.||||||.|.|||
BPUM_0046___d 353 ATGTGGGCAATAAGAGCGATTAG 375
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