Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00103 and BPUM_0046

See Amino acid alignment / Visit BSNT_00103 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:03
# Commandline: needle
#    -asequence dna-align/BSNT_00103___divIC.1.24716.seq
#    -bsequence dna-align/BPUM_0046___divIC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00103___divIC-BPUM_0046___divIC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00103___divIC-BPUM_0046___divIC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00103___divIC
# 2: BPUM_0046___divIC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity:     246/423 (58.2%)
# Similarity:   246/423 (58.2%)
# Gaps:          93/423 (22.0%)
# Score: 619.5
# 
#
#=======================================

BSNT_00103___      1 TTGAATTTTTCCAGGGAACGAACGATA------ACTGAAATACAAAACGA     44
                     |||||     |.||.|||  ||.||.|      ||  ||||.|||||.||
BPUM_0046___d      1 TTGAA-----CAAGAGAA--AAAGAAATATCGCAC--AAATTCAAAATGA     41

BSNT_00103___     45 CTATAAAGAACAAGTAGAACGGCAAAATCAGCTGAAGAAACG---AAGAC     91
                     .||..||.|||||.|.||||.||||...|||         ||   ||.||
BPUM_0046___d     42 TTACCAAAAACAAATGGAACAGCAAGCACAG---------CGCTTAAAAC     82

BSNT_00103___     92 GCAAAGGGC-TGTAC-----AGACGGTTAACTGTATTCGG------CGCC    129
                     |||||.|.| ||.||     |||.||.|.||.||.||.||      .||.
BPUM_0046___d     83 GCAAACGCCGTGGACTCCTTAGAAGGCTTACCGTGTTTGGTGTGATTGCG    132

BSNT_00103___    130 CTAGTATTCCTGACGGCAATTG---TGCTGGCAAG----CTCTGTATGGT    172
                     ||..|.||  ||       |||   ||.||..|||    |||    ||||
BPUM_0046___d    133 CTCATGTT--TG-------TTGTCTTGGTGATAAGTGCCCTC----TGGT    169

BSNT_00103___    173 CCCAAACATCTTCCCTTAGTGCAAAAGAAGAAAAGAAAGAACAGCTTGAA    222
                     |.|||.|.||.||..|.|..|.|||||||||.|||||.|....|||||||
BPUM_0046___d    170 CGCAATCGTCCTCATTAAAGGAAAAAGAAGAGAAGAAGGTTGCGCTTGAA    219

BSNT_00103___    223 AAAGAACTGAA--AAGTTTAAAGACAAAACAAACGGATTTAAAAGAAGAA    270
                     ||||||.||||  ||  |||.|.|||||.|            |.|||||.
BPUM_0046___d    220 AAAGAATTGAAGCAA--TTACAAACAAAGC------------AGGAAGAT    255

BSNT_00103___    271 ATATC----CAAATT-GAAGGATG-------AGGATTACGTCAC-AGAGC    307
                     ||.||    .||||| .||.|.||       |.||.||||| || .||.|
BPUM_0046___d    256 ATTTCTGATGAAATTAAAAAGCTGAAAAGCAAAGAATACGT-ACTCGAAC    304

BSNT_00103___    308 TTGCCAGAAGGGAC--TTATTCATGTCTGGAGACGGAGAAATTATCTTCA    355
                     |.||..||.|||||  ||||  |||||...|.|.||.||||..|||||..
BPUM_0046___d    305 TGGCACGACGGGACTATTAT--ATGTCCAAAAAAGGCGAAAAAATCTTTG    352

BSNT_00103___    356 ATGTGGAGAAGAAGAGCAAGTAG    378
                     ||||||..||.||||||.|.|||
BPUM_0046___d    353 ATGTGGGCAATAAGAGCGATTAG    375


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