Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00101 and BPUM_0045
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:03
# Commandline: needle
# -asequence dna-align/BSNT_00101___yabQ.1.24716.seq
# -bsequence dna-align/BPUM_0045___yabQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00101___yabQ-BPUM_0045___yabQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00101___yabQ-BPUM_0045___yabQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00101___yabQ
# 2: BPUM_0045___yabQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 737
# Identity: 420/737 (57.0%)
# Similarity: 420/737 (57.0%)
# Gaps: 199/737 (27.0%)
# Score: 1074.0
#
#
#=======================================
BSNT_00101___ 1 ATGACGCTGACCACACAATTCTATACAATGCTGGCGATGTCCGGT----A 46
|||||||||||....||.||.|||||.|||||..|||| ||| |
BPUM_0045___y 1 ATGACGCTGACAGTCCAGTTTTATACGATGCTTTCGAT----GGTAGCGA 46
BSNT_00101___ 47 TGGGTCTCTGGCTTGGTGCTTCGCTTGATACATACCGGCTCTTTGTCATT 96
||||..|||||||.||.||.|||||||||||.|||..|||.|||||.|.|
BPUM_0045___y 47 TGGGCATCTGGCTGGGCGCATCGCTTGATACGTACAAGCTGTTTGTGAAT 96
BSNT_00101___ 97 CGTGCCAAAACAGCCAGATGGCTATTATTTATTCATGATATTCTTTTCTG 146
||.|..||.|||||.|.||||||.||..|.||.||.|||.|.|||||.||
BPUM_0045___y 97 CGGGAAAAGACAGCAAAATGGCTTTTGATCATACACGATCTCCTTTTTTG 146
BSNT_00101___ 147 GATTGTGCAAGGGCTGCTT-TTCTTTTATGTCTTGCTTCATG-TAAATGA 194
|.|.||.||.||.|| ||| |||||||||||..||||.| || .||||||
BPUM_0045___y 147 GCTCGTACAGGGTCT-CTTATTCTTTTATGTTCTGCTGC-TGACAAATGA 194
BSNT_00101___ 195 GGGAGAATTCAGGATTTACATCTTTTTAGCGGTTCTGCTGGGCGTTGCGA 244
.||||||||||||.||||.||||||.||||.|||...||.||..|..|||
BPUM_0045___y 195 AGGAGAATTCAGGGTTTATATCTTTCTAGCCGTTGCACTAGGTTTCTCGA 244
BSNT_00101___ 245 CGTATCAGAGCCTT--TGCAAACGAATCTATATAAAAATACTGAA-ATTC 291
.||||||| ||.|| || |||| |.||.|||| |||| ||||
BPUM_0045___y 245 TGTATCAG-GCATTGATG-AAAC--AGCTGTATA-------TGAACATTC 283
BSNT_00101___ 292 GTCA--TTTACCTTGTTGTTTCTGTTTATCA----------ATTCTTCAA 329
||| ||| ||.||..|.|.|||.||||| |||||
BPUM_0045___y 284 -TCAAGTTT--CTGGTGATGTGTGTGTATCAGGCCGCTCTCATTCT---- 326
BSNT_00101___ 330 AAAAC------TCATTCAGCACGTGTTATTTCGTCCTATTGTGTGGACAT 373
.|||| |||| |||| ||.|| |.|
BPUM_0045___y 327 GAAACGGCTGGTCAT-----------------GTCC-ATCGT-----CTT 353
BSNT_00101___ 374 GCGGAGCGATCATCTGGCTGGCGGCATT---TTTATTCAAGAAAACATAC 420
.| ||| ||..|.||||||.| ||| ||.|| ||||
BPUM_0045___y 354 CC--AGC---CAATTCGCTGGCTG-ATTACCTTCAT---------CATA- 387
BSNT_00101___ 421 AG-CCTGATAGGT--TTTCTCC---TGCTGT---GTCTATATAAAATAGT 461
|| .||..||.|| ||.|||| ||||.| |||| |..|
BPUM_0045___y 388 AGTGCTATTATGTTCTTGCTCCACTTGCTCTTACGTCT--------TGTT 429
BSNT_00101___ 462 CAT-----------------------GGTTCTG---------TGTTTTCC 479
||| |||.||| ||||.|||
BPUM_0045___y 430 CATTTTACGTTTCGGCTCGTGTGGAAGGTGCTGTCCATTGTCTGTTATCC 479
BSNT_00101___ 480 G---ATCCGTTTTATCGCGAAACAATGTTTGAAACTTCTTCCTGTG---- 522
| |||.|.|| |..||||| |||...||.|||.|..|
BPUM_0045___y 480 GCTCATCTGGTT-------ACTCAATG--TGACCATTATTCATCGGATTC 520
BSNT_00101___ 523 ----AAAAT-GCGTCTAACTT---TTAGACGTTATTTT--GAAAAAGGTG 562
||||| ||| |||.| |.||| ||.|||| ...|||||.|
BPUM_0045___y 521 CCGAAAAATGGCG---AACATCAATGAGA--TTGTTTTTCTCTAAAGGAG 565
BSNT_00101___ 563 CAGGATTTCTCAAAAAGAAGAAGAAACTAT-TGATAACCATAAGAACG-- 609
|||||.||.|..||..||..||||||.||| ||.| |||||.|.||||
BPUM_0045___y 566 CAGGAATTTTACAAGGGACCAAGAAATTATCTGGT-ACCATCAAAACGAA 614
BSNT_00101___ 610 ------ACCATT----ACACGGTTTTTGAAGAAATGA 636
||.||| ||| |||.||
BPUM_0045___y 615 ATGGAAACAATTCTGGACA---------AAGTAA--- 639
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