Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00100 and BPUM_0044

See Amino acid alignment / Visit BSNT_00100 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:03
# Commandline: needle
#    -asequence dna-align/BSNT_00100___yabP.1.24716.seq
#    -bsequence dna-align/BPUM_0044___yabP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00100___yabP-BPUM_0044___yabP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00100___yabP-BPUM_0044___yabP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00100___yabP
# 2: BPUM_0044___yabP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 316
# Identity:     235/316 (74.4%)
# Similarity:   235/316 (74.4%)
# Gaps:          20/316 ( 6.3%)
# Score: 845.0
# 
#
#=======================================

BSNT_00100___      1 ATGAATTCATATTATGATCAA---AAAGGTTCTTCGTCTGT--TCCGGAA     45
                     ||||||..|||||||.|||||   .||||..|...| ||||  ||.|.|.
BPUM_0044___y      1 ATGAATCAATATTATAATCAACCTCAAGGCACGAAG-CTGTCATCAGAAG     49

BSNT_00100___     46 CAG--CATGATGTGACAAT--GAAAGGCCGGAAGCATTTAGATATTTCTG     91
                     |||  ||..||.|.|||||  ||||  |.|.|||||||||||||||.|.|
BPUM_0044___y     50 CAGAACACAATATCACAATGCGAAA--CAGAAAGCATTTAGATATTACCG     97

BSNT_00100___     92 GGGTTAAGCATGTGGAGAGTTTTGATAACGAAGAATTCCTGCTGGAAACG    141
                     |.||.||.||.|||||.||.||.|||||.||||||||.|||||.||.|||
BPUM_0044___y     98 GTGTCAAACAGGTGGAAAGCTTCGATAATGAAGAATTTCTGCTTGAGACG    147

BSNT_00100___    142 GTGATGGGAATGCTC----TCCGTCAGAGGCCAAAACCTGCAGATGAAAA    187
                     ||.|||||.||.|||    |.|||    ||..||||.|||||.|||||||
BPUM_0044___y    148 GTCATGGGGATTCTCGCGATTCGT----GGAGAAAATCTGCAAATGAAAA    193

BSNT_00100___    188 ATCTTGATGTGGAAAAAGGGATTGTTTCGATTAAAGGCAGGGTATTTGAT    237
                     |.||.|||||.||||||||..||||.|||||||||||..|.||.|||||.
BPUM_0044___y    194 ACCTAGATGTCGAAAAAGGCGTTGTGTCGATTAAAGGACGTGTCTTTGAC    243

BSNT_00100___    238 TTAGTGTACTTAGACGAACAACAAGGGGATAAAGCTAAAGGGTTTTTTAG    287
                     |||.|.||..||||.||.||.||.|||||.|||||||||||.||||||||
BPUM_0044___y    244 TTAATTTATGTAGATGAGCAGCACGGGGAGAAAGCTAAAGGATTTTTTAG    293

BSNT_00100___    288 CAAGTTGTTTAAATGA    303
                     ||||.|||||||||||
BPUM_0044___y    294 CAAGCTGTTTAAATGA    309


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