Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00097 and BPUM_0042
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:02
# Commandline: needle
# -asequence dna-align/BSNT_00097___yabN.1.24716.seq
# -bsequence dna-align/BPUM_0042___yabN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00097___yabN-BPUM_0042___yabN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00097___yabN-BPUM_0042___yabN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00097___yabN
# 2: BPUM_0042___yabN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1588
# Identity: 1020/1588 (64.2%)
# Similarity: 1020/1588 (64.2%)
# Gaps: 221/1588 (13.9%)
# Score: 3024.0
#
#
#=======================================
BSNT_00097___ 1 ATGGCGGGTAAAATTACAGTCGTCGGACTTGGTGCCGGAGACATGGACCA 50
|||||.|||||.|||||.||||||||.|||||.||.||.||||||||.||
BPUM_0042___y 1 ATGGCAGGTAAGATTACCGTCGTCGGTCTTGGGGCAGGCGACATGGATCA 50
BSNT_00097___ 51 ATTGACAATTGGTATACACAAGCTGCTGACGAAGGC---AGA--TACGCT 95
..||||..|.|||.||.||||||.|||||.|.|||| ||| || |
BPUM_0042___y 51 GCTGACGCTCGGTGTATACAAGCAGCTGAAGCAGGCGAAAGAAGTA---T 97
BSNT_00097___ 96 GTATGTCAGAACCAAGGATCATCCTTTAATTGAGGAGCTTGAAAAAGAAA 145
.|||| |||||..||||.||.||..|.|..|..||| ||| |
BPUM_0042___y 98 TTATG--AGAACGCAGGACCACCCGCTTACCGCAGAG-TTG--------A 136
BSNT_00097___ 146 CGAAGAACAT-CCGTTAC--------TTTGACGATATATATGAGAAACAT 186
.|.||.|..| ||||.|| |||||.||.||.|||||.||.||.
BPUM_0042___y 137 TGCAGGAGGTCCCGTCACTGACCTTTTTTGATGAGATTTATGAAAAGCAC 186
BSNT_00097___ 187 GATCAGTTCGAGGCGGTATATGAAGAAATTGCAGATATCCTCTTTGAAGC 236
||||||||.||..||||.|||.|.|||||..||||.||..|.|||.|||.
BPUM_0042___y 187 GATCAGTTTGATTCGGTCTATCAGGAAATCACAGAAATTTTATTTAAAGA 236
BSNT_00097___ 237 GGC-GCGGCGTGAGGACGTGGTTTACGCTGTGCCGGGACACCCTTTTGTC 285
||| |||| ...||||..|.||.|||||.||.||.||.||.||.||||||
BPUM_0042___y 237 GGCAGCGG-AAAAGGAGATTGTGTACGCAGTACCAGGTCATCCATTTGTC 285
BSNT_00097___ 286 GCAGAAAAAACAGTTCAGCT------------GCTGACGGAGCGGGAGGA 323
||||||||.||.|||||||| ||.|...|||||.|
BPUM_0042___y 286 GCAGAAAAGACTGTTCAGCTATTAGTTTCTCAGCAGCAAGAGCGTG---- 331
BSNT_00097___ 324 AAAGGAAAACGTTCAAGTGAAAGTCGCGGGTGGACAAAGTTTCCTTGATG 373
||| ||.|||||...||.||.|||||||||||.||..|.||||
BPUM_0042___y 332 ---GGA-----TTGAAGTGTCTGTTGCTGGTGGACAAAGCTTTTTGGATG 373
BSNT_00097___ 374 CCACATTCAATGCCTTGCAAATTGACCCGATTGAAGGTTTTCAATTTGTG 423
|.||.||.|||.|||||||.||.|||||.||.||.||.||.|||||.||.
BPUM_0042___y 374 CGACGTTTAATTCCTTGCAGATCGACCCAATCGAGGGATTGCAATTCGTT 423
BSNT_00097___ 424 GATGCCGGCACAT-TGTCCGCGGATGAGC-----TTGAGCTCAGACATCA 467
|||||.|| |.|| ||...|||||.||.| ||||.| ||.||
BPUM_0042___y 424 GATGCAGG-AGATATGAGAGCGGACGATCTCAAATTGACC-----CAGCA 467
BSNT_00097___ 468 TCTGATCATATGTCAGGTTTACGACCAAATGACGGCTTCTGAA-GTCAAG 516
|.|..||||.||||||||.||.||.||.||.||.||||| ||| ||.||.
BPUM_0042___y 468 TGTCCTCATTTGTCAGGTATATGATCAGATCACTGCTTC-GAATGTGAAA 516
BSNT_00097___ 517 CTGACATTGATGGAGAAGCTGCCTGATGATTATGAGGTCGTCATTGTGAC 566
||.||..|||||||.|||||.||||||||||||||.|||...||.|||||
BPUM_0042___y 517 CTCACGCTGATGGAAAAGCTTCCTGATGATTATGAAGTCTATATAGTGAC 566
BSNT_00097___ 567 TGCAGC---AGGCAGCCGTGGCGAGGAGATCAAGACAGTGCCATTATTTG 613
|||.|| |.|||||| || ||..||||.|...|.||.||.|||||||
BPUM_0042___y 567 TGCGGCTGGAAGCAGCC-TG--GAACAGATTACTGCCGTTCCTTTATTTG 613
BSNT_00097___ 614 AGCTGGACCGCAATGTCGCCTTGAACAACTTAACAAGTGTGTATATTCCG 663
|.||.||.||..||||..|..|.||.||||||||.|||||.|||.|.||.
BPUM_0042___y 614 AACTTGATCGAGATGTGTCGATAAATAACTTAACGAGTGTTTATGTACCT 663
BSNT_00097___ 664 CCGATTAAAGAAGAGAAGCTGCTTTATCACGAATTCTCCACGTTCCGAAG 713
||||||.||||.||.|||||||||||..|..||||...||..|||||...
BPUM_0042___y 664 CCGATTCAAGATGAAAAGCTGCTTTACAAACAATTTGACATCTTCCGTGA 713
BSNT_00097___ 714 CATCATCAG-------AGAGCTTCGCGGACCTAATGGATGTCCGTGGGAT 756
|.|||||.| ||||.|.||.| .||.|||||.||||||
BPUM_0042___y 714 CGTCATCCGTACATTAAGAGGTCCGGG-------CGGCTGTCCATGGGAT 756
BSNT_00097___ 757 AAAAAGCAGACGCATCAGTCA-TTAAAGCAGTACATGATTGAAGAATGTT 805
.||||.||.||..||.||||| ||||| |..||..|.|||||||||||||
BPUM_0042___y 757 CAAAAACAAACCAATGAGTCACTTAAA-CCCTATTTAATTGAAGAATGTT 805
BSNT_00097___ 806 ATGAGCTTCTCGAAGCTATTGACGAAGAAGACACAGACCATATGATCGAA 855
||||.||.||.|||||.||.||.|||||.||..|||||||||||.|.||.
BPUM_0042___y 806 ATGAACTGCTTGAAGCGATAGATGAAGATGATCCAGACCATATGGTGGAG 855
BSNT_00097___ 856 GAGCTTGGTGACGTTTTGCTTCAGGTCTTGCTTCACGCGCAAATTGGTGA 905
|||||.||.||.||..||||.|||||.||.|||||.||.|||||.|||||
BPUM_0042___y 856 GAGCTCGGAGATGTGATGCTACAGGTGTTACTTCATGCTCAAATCGGTGA 905
BSNT_00097___ 906 AGATGAAGGTTATTTCACAATTGATGATGTCATAAAAGGAA--TCAGTGA 953
||||||.||.|.||||.|.||||||||.|||||..| |.| |||..||
BPUM_0042___y 906 AGATGATGGCTTTTTCTCCATTGATGACGTCATCCA--GCATGTCACAGA 953
BSNT_00097___ 954 AAAAATGGTCCGAAGACATCCCCATGTGTTT------AAAGATGTTAAGG 997
.||||||.|.||.|||||||||||||||||| |.|.|||| |
BPUM_0042___y 954 GAAAATGATTCGTAGACATCCCCATGTGTTTGGTGACACAAATGT----G 999
BSNT_00097___ 998 T-TCAGGATGAAAACGATGTTTTGGCCAATTGGGAAGATATAAA------ 1040
| | ||.|.|.|.||.||..|.|.|||.||||||.|.||.||
BPUM_0042___y 1000 TCT---GAAGCAGAAGAAGTGGTCGTCAACTGGGAAAAAATCAAGCAGTT 1046
BSNT_00097___ 1041 --AAAGGCCGAAAAAAATACATCTGA------ATCATC---GTTACTAGA 1079
|.|.|||| || |.|.|| |||.|.|..
BPUM_0042___y 1047 GGAGAAGCCG--------------GAGCGGGCAGCCTCTATGTTGCAATC 1082
BSNT_00097___ 1080 CA-----GCGTACCGAAAACCCTTCCAGCTCTTTCGAAAGCTGCTAAATT 1124
|| ||| ||.||||||||..|..||||.||...|||..|
BPUM_0042___y 1083 CATCCCTGCG--------ACGCTTCCAGCATTAACGAAGGCATATAAGCT 1124
BSNT_00097___ 1125 GCAGAAAAAAGCAGCGAAGGTCGGTTTTGACTGGGAAGACGTCAGCGATA 1174
.||.||.|||||.||.||.||.||.|||||.|||..|||.||.|.|||||
BPUM_0042___y 1125 CCAAAAGAAAGCCGCCAAAGTAGGCTTTGATTGGACAGATGTGAACGATA 1174
BSNT_00097___ 1175 TTTGGGA-AAAGGTAAG-TGAGGAAATGAAGGAGTTT-TCTTCTGAGGTT 1221
|||||.| ||| ||.| .||.||||.|.||||.||| ||.| |||.||.
BPUM_0042___y 1175 TTTGGAACAAA--TACGAAGAAGAAAAGCAGGAATTTCTCGT-TGAAGTG 1221
BSNT_00097___ 1222 TC--TGAAGCTCCTCACGAA------------CACAATCTTAAAGCTGAG 1257
.| .|||| ||..||||| ||.| |.||||.|||.
BPUM_0042___y 1222 GCAGAGAAG--CCGGACGAAAGTGCAACGAAGCAGA---TGAAAGATGAA 1266
BSNT_00097___ 1258 TTTGGCGA----CATTTTGTTCGCGCTGGTGAATGTAGCCCGCTTCTACA 1303
|||||.|| |..|||||| ||.||.||..|.|...|.|||||..
BPUM_0042___y 1267 TTTGGAGATCTTCTATTTGTT----CTCGTCAACATTGGAAGGTTCTATC 1312
BSNT_00097___ 1304 AAATAGAGCCAGAGGAA--GCGCT------GGCCATGACTAATGAC-AAA 1344
|..|||||||.|| || ||||| .|||| || || |||
BPUM_0042___y 1313 AGCTAGAGCCTGA--AACGGCGCTCGCTTCCGCCA--AC-----ACAAAA 1353
BSNT_00097___ 1345 TTCCGGAGACGGTTCTC-GTACATTGAGGAAACAGCGAAGGAAGAGGGA- 1392
|||..|.||||.|| || |.|.|||||..|||.|||.|||||...||||
BPUM_0042___y 1354 TTCATGCGACGCTT-TCAGCATATTGAACAAAAAGCAAAGGACATGGGAC 1402
BSNT_00097___ 1393 GTCGAGTTGGCTGATATGTCCCTTGAGGACATGGACAAACTGTGGAATGA 1442
||..| ||.|..||..|..|.||.|||||.||||||.|.||.|||||.||
BPUM_0042___y 1403 GTTCA-TTAGAAGAATTAACACTAGAGGAAATGGACGATCTATGGAACGA 1451
BSNT_00097___ 1443 AGCAAA------AGAAACTGAGAGGAGATCATAG---- 1470
.||.|| |||| |||||.||.||||.
BPUM_0042___y 1452 TGCCAAACGTATAGAA----AGAGGTGAGCATACATGA 1485
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