Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00095 and BPUM_0040

See Amino acid alignment / Visit BSNT_00095 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:02
# Commandline: needle
#    -asequence dna-align/BSNT_00095___spoVT.1.24716.seq
#    -bsequence dna-align/BPUM_0040___spoVT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00095___spoVT-BPUM_0040___spoVT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00095___spoVT-BPUM_0040___spoVT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00095___spoVT
# 2: BPUM_0040___spoVT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     416/540 (77.0%)
# Similarity:   416/540 (77.0%)
# Gaps:           6/540 ( 1.1%)
# Score: 1576.5
# 
#
#=======================================

BSNT_00095___      1 ATGAAAGCAACCGGTATCGTACGTCGTATTGATGACTTAGGCCGGGTCGT     50
                     |||||||||||.||.||.|||||.||.||.|||||..||||..|.||.||
BPUM_0040___s      1 ATGAAAGCAACTGGAATTGTACGCCGCATCGATGATCTAGGTAGAGTGGT     50

BSNT_00095___     51 GATTCCTAAAGAAATTCGAAGAACTCTGAGAATCAGGGAAGGCGATCCGC    100
                     .|||||.||.||.|||||.|||||..||.|.|||.|||||||.|||||||
BPUM_0040___s     51 TATTCCGAAGGAGATTCGCAGAACATTGCGCATCCGGGAAGGAGATCCGC    100

BSNT_00095___    101 TTGAGATTTTTGTAGATCGTGACGGAGAAGTGATTTTGAAAAAGTATTCA    150
                     ||||||||||.||.||.||.||.||||||||.||||||||.||||||||.
BPUM_0040___s    101 TTGAGATTTTCGTCGACCGCGATGGAGAAGTAATTTTGAAGAAGTATTCG    150

BSNT_00095___    151 CCGATCAGTGAGCTTGGAGACTTTGCAAAGGAGTATGCAGACGCGCTTTA    200
                     |||||.||||||||.|||||||||||||||||.|||||.||.||..|.|.
BPUM_0040___s    151 CCGATTAGTGAGCTAGGAGACTTTGCAAAGGAATATGCTGATGCATTATT    200

BSNT_00095___    201 CGACAGCCTCGGCCATTCAGTGCTGATTTGTGATCGTGATGTATATATTG    250
                     ||||||..|.||.|||||..|.||||||||||||||.|||...|||||||
BPUM_0040___s    201 CGACAGTTTGGGTCATTCCATCCTGATTTGTGATCGAGATACGTATATTG    250

BSNT_00095___    251 CCGTGTCCGGCAGCTCCAAAAAAGATTACTTAAACAAGTCAATCAGTGAA    300
                     |.||.||||||||.||.||||||||.|||||||||||.||.||||||||.
BPUM_0040___s    251 CTGTATCCGGCAGTTCGAAAAAAGAGTACTTAAACAAATCCATCAGTGAT    300

BSNT_00095___    301 ATGCTGGAAAGAACAATGGATCAGCGCAGCTCCGTGCTTGAGAGTGATGC    350
                     .|.||.|||.||||||||||.|||||.|..||  ||.||.|||...|.||
BPUM_0040___s    301 TTACTTGAACGAACAATGGACCAGCGTAATTC--TGTTTTAGAAGAAAGC    348

BSNT_00095___    351 GAAATCAG---TACAGCTTGTGAATGGAATTGATGAGGACATGAATTCTT    397
                      |||..||   |.||.|||||..||||.||||||||.|||.|...|.|||
BPUM_0040___s    349 -AAAAAAGAAATTCAACTTGTCGATGGTATTGATGATGACGTATCTGCTT    397

BSNT_00095___    398 ATACTGTCGGCCCAATTGTGGCGAACGGTGATCCGATAGGTGCTGTGGTG    447
                     ||||..|.|..||.|||||.||.|||||.||||||||.||.||.||.||.
BPUM_0040___s    398 ATACCATTGCACCTATTGTTGCAAACGGAGATCCGATTGGCGCCGTCGTC    447

BSNT_00095___    448 ATCTTTTCAAAAGACCAGACAATGGGCGAAGTAGAGCATAAAGCCGTTGA    497
                     .|.|||||.|||||.|...|||||||.|||||.|||||||||||.|..||
BPUM_0040___s    448 TTATTTTCTAAAGAGCGTTCAATGGGGGAAGTGGAGCATAAAGCGGCAGA    497

BSNT_00095___    498 AACAGCAGCTGGATTTTTGGCTCGTCAAATGGAACAGTAG    537
                     |||.||||||||.||.||.||.||||||||||||||.|||
BPUM_0040___s    498 AACGGCAGCTGGCTTCTTAGCCCGTCAAATGGAACACTAG    537


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