Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00090 and BPUM_0036
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:01
# Commandline: needle
# -asequence dna-align/BSNT_00090___ctc.1.24716.seq
# -bsequence dna-align/BPUM_0036___ctc.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00090___ctc-BPUM_0036___ctc.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00090___ctc-BPUM_0036___ctc.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00090___ctc
# 2: BPUM_0036___ctc
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity: 425/653 (65.1%)
# Similarity: 425/653 (65.1%)
# Gaps: 64/653 ( 9.8%)
# Score: 1247.0
#
#
#=======================================
BSNT_00090___ 1 ATGGCAACTTTAACGGCAAAAGAAAGAACGGACTTTACTCGTTCGTCTCT 50
|||||||||||||..|||||..|||||||.||.||.|..|||||..|.||
BPUM_0036___c 1 ATGGCAACTTTAAAAGCAAATAAAAGAACTGATTTCAAACGTTCCACACT 50
BSNT_00090___ 51 TCGGAATATCCGTACTTCAGGACATGTTCCAGGTATCATATATGGGAAGG 100
.|..||.||||||..|||||||||.|||||.|||.|||||||.||.||..
BPUM_0036___c 51 GCAAAAAATCCGTCATTCAGGACACGTTCCTGGTGTCATATACGGAAAAA 100
BSNT_00090___ 101 ATACGGGTAACAAAC---CTGTGTCATTAGACAGTGTGGAGCTCATCAAA 147
||||.| ||||.| ||||.|||.|||||||..|.|| .|.||.|||
BPUM_0036___c 101 ATACAG---ACAACCTGGCTGTTTCACTAGACAGCATCGA-TTTATTAAA 146
BSNT_00090___ 148 -ACGCTGA-GGGACGAAGGCAAAAATGCAGTCATTACGCTTGAGGTCAGC 195
|| ||.| |.||.|||||.||.|||.||.||||.||..|.||.||.|.|
BPUM_0036___c 147 GAC-CTTACGTGATGAAGGGAAGAATACAATCATCACATTGGACGTGAAC 195
BSNT_00090___ 196 GGAGAAAAACACTCAGTCATGGTAACAGACCTGCAGACGGACCCGCTGAA 245
||.||||.|.|.||.||.|||||.|||||..|.||.||.||||||||.||
BPUM_0036___c 196 GGTGAAACAAAATCCGTGATGGTCACAGAATTACAAACAGACCCGCTAAA 245
BSNT_00090___ 246 AAATGAAATCACT----CATGCTGATTTTCAAGTAGTTAATATG-AGTGA 290
|||||| .|| |||||.||.||.|||||.||..||.|| ||.|
BPUM_0036___c 246 AAATGA----GCTTGTCCATGCAGACTTCCAAGTGGTCGATTTGCAGCG- 290
BSNT_00090___ 291 GGACATTGAAGTGGAAGTTCCGATTCATCTGACCGGAGAAGCCATTGGAG 340
.||.|||||||.|||.||.||..||||..|||..||.|||.|.|..||||
BPUM_0036___c 291 TGAAATTGAAGCGGATGTACCTGTTCAGTTGATTGGCGAATCTAAAGGAG 340
BSNT_00090___ 341 TGAAAAACGGAGGCGTACTGCAGCAGCCGTTATATGCACTTACTGTAAAG 390
|.|||.|.||.||.||.||.||||||||..|||.||.|||..|..|.|..
BPUM_0036___c 341 TTAAAGATGGCGGTGTGCTTCAGCAGCCACTATTTGAACTATCCATCACA 390
BSNT_00090___ 391 GCCAAGCCAAAAGCCATTCCGCAAACGATTGAGGCTGATATTTCAAGCCT 440
||.||.|||||||..||.||.||....||.||.||.||||||.|||.|.|
BPUM_0036___c 391 GCGAAACCAAAAGATATCCCACAGCATATAGAAGCAGATATTACAAACTT 440
BSNT_00090___ 441 CGATGTAAATGAAGTACTGACGATTGCGGATTTGCCTGCTGGCGGTGACT 490
.||.||.|||||.||.||.||..|.||.||||||||||.| |.||.|
BPUM_0036___c 441 AGAAGTGAATGATGTCCTAACAGTCGCTGATTTGCCTGTT--CAGTCA-- 486
BSNT_00090___ 491 ACTCCT------TTAATCATGAGTCAGATGAGGTTGTGGCTTCAATCCTT 534
||.| |.|||.|.||..||||.||.||.|||||.||.||..|.
BPUM_0036___c 487 --TCATATCAAGTGAATAACGATCCAGAAGAAGTCGTGGCATCCATTTTA 534
BSNT_00090___ 535 CCTCCGCAGCAGCAGGAAGCAG------CTGAGGTCGAT---GAAGAGGA 575
||.||.|||| ||.||| ||||....||| ||||||||
BPUM_0036___c 535 CCGCCTCAGC------AATCAGAGGTTCCTGAACCAGATAGCGAAGAGGA 578
BSNT_00090___ 576 ATCTGCC----GATGCTCAGCC------AGAAGGTGAAAACGA---ACAA 612
| || ||..||.||.| ||||...||.||||| |.||
BPUM_0036___c 579 A----CCAAAAGAACCTGAGGCTATTAAAGAAAAGGATAACGATGGAGAA 624
BSNT_00090___ 613 TAA 615
|||
BPUM_0036___c 625 TAA 627
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