Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00083 and BPUM_0031

See Amino acid alignment / Visit BSNT_00083 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:01
# Commandline: needle
#    -asequence dna-align/BSNT_00083___purR.1.24716.seq
#    -bsequence dna-align/BPUM_0031___purR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00083___purR-BPUM_0031___purR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00083___purR-BPUM_0031___purR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00083___purR
# 2: BPUM_0031___purR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 885
# Identity:     638/885 (72.1%)
# Similarity:   638/885 (72.1%)
# Gaps:          78/885 ( 8.8%)
# Score: 2325.0
# 
#
#=======================================

BSNT_00083___      1 ATGAAGTTTCGTCGCAGCGGCAGATTGGTGGACTTAACAAATTATTTGTT     50
                     ||||||||||||||.|||||||||||||||||||||||||||||.|||||
BPUM_0031___p      1 ATGAAGTTTCGTCGAAGCGGCAGATTGGTGGACTTAACAAATTACTTGTT     50

BSNT_00083___     51 AACCCATCCGCACGAGTTAATACCGCTAACCTTTTTCTCTGAGCGGTATG    100
                     |.||||.|||||||...||.|||||.||||||||||..|.||..|.|||.
BPUM_0031___p     51 AGCCCACCCGCACGTACTAGTACCGTTAACCTTTTTTGCAGAAAGATATC    100

BSNT_00083___    101 AATCTGCAAAATCATCGATCAGTGAAGATTTAACAATTATTAAACAAACC    150
                     |||||||.||.||.||.||.||||||||.|||||.|||||.|||||.|||
BPUM_0031___p    101 AATCTGCGAAGTCCTCCATTAGTGAAGACTTAACGATTATCAAACAGACC    150

BSNT_00083___    151 TTTGAACAGCAGGGGATTGGTACTTTGCTTACTGTTCCCGGAGCTGCCGG    200
                     ||.|||||||||||.||.||.||.|||||||||||.||.||.|||||.||
BPUM_0031___p    151 TTCGAACAGCAGGGAATAGGCACATTGCTTACTGTACCTGGTGCTGCTGG    200

BSNT_00083___    201 AGGCGTTAAATATATTCCGA----------AAATGAAGCAGGCTGAAGCT    240
                     .||.||.|||||||||||||          |||.|||||||.|       
BPUM_0031___p    201 CGGAGTGAAATATATTCCGAAGATTCACCTAAAAGAAGCAGAC-------    243

BSNT_00083___    241 GAAG-AGTTTGTGCAGACAC----TTGGACAGTCGCTGGCAAATCCTGAG    285
                     ||.| |||        |.||    |.|||.|..|.||..|.|.||||||.
BPUM_0031___p    244 GACGTAGT--------AAACGATATCGGAGAAGCTCTATCGACTCCTGAA    285

BSNT_00083___    286 CGTATCCTTCCGGGCGGTTATGTATATTTAACGGATATCTTAGGAAAGCC    335
                     |||.|.|||||.|||||||||.||||||||||.|||.|.|||||.||.||
BPUM_0031___p    286 CGTGTACTTCCTGGCGGTTATTTATATTTAACCGATGTTTTAGGTAATCC    335

BSNT_00083___    336 ATCTGTACTCTCCAAGGTAGGGAAGCTGTTTGCTTCCGTGTTTGCAGAGC    385
                     |||..|.||..|.||..|.||.|||||.|||||..||.|.||||||||.|
BPUM_0031___p    336 ATCAATCCTTGCGAAAATCGGTAAGCTATTTGCGACCATCTTTGCAGACC    385

BSNT_00083___    386 GCGAAATTGATGTTGTCATGACCGTTGCCACGAAAGGCATCCCTCTTGCG    435
                     |.|..|||||.||.||||||||.|||||.||.||.||.||.||..||||.
BPUM_0031___p    386 GTGCGATTGACGTCGTCATGACTGTTGCGACAAAGGGTATTCCAATTGCC    435

BSNT_00083___    436 TATGCAGCTGCAAGTTATTTGAATGTACCTGTTGTGATCGTTCGTAAAGA    485
                     |||.|.|.|||..|||||||.|||||.||.||||||||||||.|.|||||
BPUM_0031___p    436 TATTCTGTTGCGGGTTATTTAAATGTGCCGGTTGTGATCGTTAGAAAAGA    485

BSNT_00083___    486 CAATAAGGTAACAGAGGGCTCCACAGTCAGCATTAATTACGTTTCAGGCT    535
                     .|||||.|||||.||.||.||.||.||.||.|||||.||||..|||||.|
BPUM_0031___p    486 TAATAAAGTAACTGAAGGATCAACTGTAAGTATTAACTACGCGTCAGGTT    535

BSNT_00083___    536 CCTCAAACCGCATTCAAACAATGTCACTTGCGAAAAGAAGCAT-GA-AAA    583
                     |.||.||.||.||||||||.|||||||||||.||..|.|||.| || |||
BPUM_0031___p    536 CGTCTAATCGAATTCAAACCATGTCACTTGCAAAGCGGAGCTTAGATAAA    585

BSNT_00083___    584 CGGGGTCAAACGTACTCATTATTGATGACTTTATGAAAGCAGGCGGCACC    633
                       |||||.||.||.||.||.||||||||||||||||||||.|||||.|||
BPUM_0031___p    586 --GGGTCCAATGTCCTGATCATTGATGACTTTATGAAAGCTGGCGGAACC    633

BSNT_00083___    634 ATTAATGGTATGATTAATCTGTTGGATGAGTTTAACGCAAATGTGGCGGG    683
                     |||||.||.|||.|.|||.|..|.||.||.|||||.||||||||.||.||
BPUM_0031___p    634 ATTAACGGCATGGTGAATTTACTTGAGGAATTTAATGCAAATGTTGCAGG    683

BSNT_00083___    684 AATCGGCG-TCTTAGTT-GAAGCCGAAGGAGTAGATGAACGTCTTGTTGA    731
                     .|||||.| ||||  || ||||.||||||.||||||||||||||.|||||
BPUM_0031___p    684 GATCGGTGTTCTT--TTAGAAGACGAAGGCGTAGATGAACGTCTCGTTGA    731

BSNT_00083___    732 CGAATATATGTCACTTCTTACTCTTTCAACCATCAACATGAAAGAGAAGT    781
                     .||||||.|.||.|||.|.|..|||||||||||..|.|||||..|||||.
BPUM_0031___p    732 TGAATATGTATCGCTTTTAAAGCTTTCAACCATTGATATGAAGCAGAAGA    781

BSNT_00083___    782 CCATTGAAATTCA-GAATGGCAATTTTCTGCG----TTTTCTT---AAAG    823
                     .||||||.|||.| ||| ||||| ||||..||    |||||.|   ||||
BPUM_0031___p    782 TCATTGAGATTAATGAA-GGCAA-TTTCCACGAGTTTTTTCATTCGAAAG    829

BSNT_00083___    824 ACAATCTTTTAAAGAATGGAGAGACAGAATCATGA    858
                            .||||                       
BPUM_0031___p    830 -------CTTAA-----------------------    834


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00083 and BPUM_0031

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
