Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00075 and BPUM_0024
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:00
# Commandline: needle
# -asequence dna-align/BSNT_00075___yabE.1.24716.seq
# -bsequence dna-align/BPUM_0024___yabE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00075___yabE-BPUM_0024___yabE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00075___yabE-BPUM_0024___yabE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00075___yabE
# 2: BPUM_0024___yabE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1375
# Identity: 876/1375 (63.7%)
# Similarity: 876/1375 (63.7%)
# Gaps: 233/1375 (16.9%)
# Score: 2703.5
#
#
#=======================================
BSNT_00075___ 1 TTGGGAGAAAGAGAAGGGAGGGTTGACAGCCTTTTAGATACTCTATATAA 50
BPUM_0024___y 0 -------------------------------------------------- 0
BSNT_00075___ 51 TCTCTCCGAGGAGAAGGAGGCGTTTTTCATCACACAAAAAATGAAAAAGC 100
||||||||.|
BPUM_0024___y 1 ----------------------------------------ATGAAAAATC 10
BSNT_00075___ 101 TGTTTTCCGTAAAGCTTAGCAAAAGCAAAG---TCATT-CTGGTTGCTGC 146
|||||||.||||||| |||.|||||..||| |.||| ||.|| ||.
BPUM_0024___y 11 TGTTTTCTGTAAAGC-TAGGAAAAGGCAAGGTTTTATTACTAGT---TGT 56
BSNT_00075___ 147 TTGTTTGCTTTTGGCAGGAAGCGGGACTGCGTACGCGGCTCATGAGCTGA 196
|||.||||||||.||.||||..|||||.||.||||..||.||||||||.|
BPUM_0024___y 57 TTGCTTGCTTTTAGCTGGAACTGGGACGGCTTACGGTGCGCATGAGCTCA 106
BSNT_00075___ 197 CGAAACAATCAGTCT-----CAGTTTCTATCAATGGCAAAAAGAA-ACAT 240
| .||.|||||| || ||||.||||||||.|||.|||| |||
BPUM_0024___y 107 C----TAAGCAGTCTATTACCA-TTTCAATCAATGGTAAAGAGAAGACA- 150
BSNT_00075___ 241 ATACGCACACATGCAAATACAGTCGGTGATCT--TTTGGAGACGCTTGAT 288
||.||.|||||||.|.|.|||||.|...|.|| ||| .|||| ||||..
BPUM_0024___y 151 ATTCGTACACATGAAGAGACAGTAGCACAGCTGCTTT-CAGAC-CTTGGA 198
BSNT_00075___ 289 ATAAAGACAAGAGACGAAGACAAGATCACACCT-------GCTAAACAGA 331
|||||.||.| ||.||.|| |||||.|.|| .|||| |.|
BPUM_0024___y 199 ATAAAAACCA-AGGCGGAG----GATCATATCTCTCCAAGTCTAA--ATA 241
BSNT_00075___ 332 CAAAGAT--AACAGCAGACATGGACGTTGTGTATGAGGCTGCAAAACCTG 379
||||||| ||.| || |||||.||.||||||||||.||.||.|.|||.|
BPUM_0024___y 242 CAAAGATTGAAGA-CA-ACATGAACATTGTGTATGATGCGGCTATACCGG 289
BSNT_00075___ 380 TGAAGCTTACAATAAACGGGGAAGAAAAGACGTTATGGTCAACAGCAAAA 429
|..|.||.||..||.|.|||.||||.||.|||.|||||.||||||...|.
BPUM_0024___y 290 TTCATCTAACCCTAGATGGGAAAGAGAAAACGATATGGACAACAGATCAG 339
BSNT_00075___ 430 ACGGTCGGTGCATTACTG------GACGAACA-AGATGTTGATGTGAAAG 472
|||||.||.||||||.|| || |||.| ||||.||| |.|||
BPUM_0024___y 340 ACGGTTGGAGCATTATTGAAGAATGA-GAAGATAGATATTG----GGAAG 384
BSNT_00075___ 473 AACAAGATCAAATTGATCCCGCAATAGAT-ACGGATATTTCGAAAGACAT 521
||.||||||.|...|||.|.||.|.|| || .|.|||...|||||.||
BPUM_0024___y 385 --CACGATCAAGTAACTCCAGGAAAAAATGAC-AAGATTAAAAAAGATAT 431
BSNT_00075___ 522 GAAGATTAACATAGAGCCCGCATTTCAGGTTACTGTGAATGATGCAGGGA 571
|.|..||....|.||||..||.||..||||.|..||.|||||||.|||.|
BPUM_0024___y 432 GGATCTTGTGGTTGAGCAGGCCTTCGAGGTCAGCGTAAATGATGGAGGAA 481
BSNT_00075___ 572 AACA-AAAGAAGATCTGGACGACTTCGACTACGGTCGCTGACTTTTTAAA 620
||.| |||.||| |.|||||.|||||||||||||||||||||||||||||
BPUM_0024___y 482 AAGAGAAAAAAG-TGTGGACCACTTCGACTACGGTCGCTGACTTTTTAAA 530
BSNT_00075___ 621 ACAGCAAAAGATGAACATAAAAGACG-AAGATAAAATCAAGCCTGCGTTA 669
.||.|||.||.||||..| .||||.| |.|||||.|||||.|||||||||
BPUM_0024___y 531 GCAACAAGAGCTGAAGCT-CAAGAAGCACGATAAGATCAAACCTGCGTTA 579
BSNT_00075___ 670 GAT--GCAAAGCTGACGAAAGGAAAG-GCTGATATTACA-ATTACTCGTA 715
.|| .||.| |.||.||| .|||| ||.|||||| || ||.|||||..
BPUM_0024___y 580 CATAGTCATA--TAACTAAA-AAAAGCGCAGATATT-CAGATCACTCGGG 625
BSNT_00075___ 716 TCGAAAAGGTCACCGATGTAGTTGAAGAGAAGATTGCGTTCGATGTGAAA 765
|.|||||.||||||||||||||.||||||||.|||||.||.|||...|||
BPUM_0024___y 626 TGGAAAAAGTCACCGATGTAGTGGAAGAGAAAATTGCTTTTGATACCAAA 675
BSNT_00075___ 766 AAGCAAGAAGA-CGCTTCTCTTGAAAAAGGGAAAGAAAAGGTCGTCCAAA 814
.|..||.|.|| || |||||||||||||||.|||||.|||||..|..|||
BPUM_0024___y 676 CATAAAAAGGATCG-TTCTCTTGAAAAAGGAAAAGAGAAGGTGCTTAAAA 724
BSNT_00075___ 815 AAGGAAAAGAAGGCAAGCTAAAAAAACATTTCGAAGTCGTTAAAGAAAAC 864
||||..|||||||.||..|.||.||.||.|..|...|.||.|||||||||
BPUM_0024___y 725 AAGGTGAAGAAGGTAAATTGAAGAAGCACTATGCCATTGTGAAAGAAAAC 774
BSNT_00075___ 865 GGTAAAGAAGTGTCCAGAGAGCTTG-TAAAAGAAGAAACAGCTGAACAA- 912
||.||||..|||||.|.||| .||| |.|||||||..| |||||.||
BPUM_0024___y 775 GGCAAAGTGGTGTCTAAAGA-ATTGATTAAAGAAGTGA---CTGAAAAAG 820
BSNT_00075___ 913 --AGCAAAGA---TAAAGTGATTGCTGTCGGCACA-AAGCAAAGCAGTCC 956
|||||.|| |..|||| ||.||.||.||| ||| |||||
BPUM_0024___y 821 ATAGCAAGGATCGTTTAGTG---GCCGTTGGTACACAAG------AGTCC 861
BSNT_00075___ 957 AAAATTTGAAACGGTCAGTGCTTCAGGTGA----------TTCAAAAACA 996
.|| || ||.||.|.|.|.|| |||||
BPUM_0024___y 862 CAA----GA-------AGAGCCTAAAGCGACACCTGCCGTTTCAA----- 895
BSNT_00075___ 997 GTTGTGTCCCGCAGCAATGAATCAACAGGCAAAG----TCATGACTGTAT 1042
|.|||||||||||..||||.|||| |.| |||..
BPUM_0024___y 896 ----------GAAGCAATGAATCGTCAGGAAAAGAATTTTA----TGTGA 931
BSNT_00075___ 1043 CATCTACGGCTTATACGGCAAGCTGCAGC-GGTTGT-TCAGGACATACAG 1090
|.||.||.||||||||.||.||||| .|| ||.||| .|.|||.| ||..
BPUM_0024___y 932 CGTCGACAGCTTATACAGCGAGCTG-TGCTGGATGTACCGGGAGA-ACGT 979
BSNT_00075___ 1091 CGACAGGCGTCAATTTAAAAAATAATCCGAATGCCAAAGTCATCGCTGTG 1140
|.|||||....|||||||||...|||||...|||.||.|||||.||.||.
BPUM_0024___y 980 CAACAGGATATAATTTAAAATCAAATCCAGGTGCAAAGGTCATAGCAGTT 1029
BSNT_00075___ 1141 GATCCAAATGTCATTCCGCTAGGCTCCAAAGTCCACGTGGAAGGCTATGG 1190
|||||.|.||||||||||||||||||.|||||..|.||||||||||||||
BPUM_0024___y 1030 GATCCGAGTGTCATTCCGCTAGGCTCTAAAGTGTATGTGGAAGGCTATGG 1079
BSNT_00075___ 1191 ATATGCCATTGCTGCAGATACCGGTTCAGCGATTAAAGGGAACAAGATAG 1240
|||||||.||||..||||.||.||.||.||.||.||||||||.||.||.|
BPUM_0024___y 1080 ATATGCCGTTGCATCAGACACTGGATCTGCTATAAAAGGGAATAAAATTG 1129
BSNT_00075___ 1241 ACGTCTTTTTCCCAGAGAAATCATCGGCGTACCGATGGGGAAATAAAACA 1290
|.||.||..|||||.|.||.||..|.||.||.|.|||||||||||||..|
BPUM_0024___y 1130 ATGTGTTCGTCCCAAATAAGTCGGCAGCTTATCAATGGGGAAATAAACGA 1179
BSNT_00075___ 1291 GTCAAAATTAAAAT-CTTAAATTAG 1314
||.|||||||.|.| ||.||||.|
BPUM_0024___y 1180 GTTAAAATTAGAGTGCTCAAATAA- 1203
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