Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00065 and BPUM_0016
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00065___yaaT.1.24716.seq
# -bsequence dna-align/BPUM_0016___yaaT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00065___yaaT-BPUM_0016___yaaT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00065___yaaT-BPUM_0016___yaaT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00065___yaaT
# 2: BPUM_0016___yaaT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 848
# Identity: 652/848 (76.9%)
# Similarity: 652/848 (76.9%)
# Gaps: 40/848 ( 4.7%)
# Score: 2492.5
#
#
#=======================================
BSNT_00065___ 1 TTGTACAATGTAATTGGTGTCCGCTTTAAGAAAGCGGGTAAAATATATTA 50
||||||||.|||||||||||.||||||||.||||||||.|||||.|||||
BPUM_0016___y 1 TTGTACAACGTAATTGGTGTTCGCTTTAAAAAAGCGGGCAAAATCTATTA 50
BSNT_00065___ 51 TTTTGATCCGAATGGATTTCATATAGAACATGACAGCTGCGTAATTGTAG 100
|||.|||||.||||||||||||||||||.||||.||.||.||.|||||||
BPUM_0016___y 51 TTTCGATCCTAATGGATTTCATATAGAAAATGATAGTTGTGTCATTGTAG 100
BSNT_00065___ 101 AAACTGTCAGAGGCGTTGAGTACGGCCAGGTCGTAATTGCAAATAAACAG 150
|.||.||||||||.|||||||||||.||.||.||.||.||.||||||.|.
BPUM_0016___y 101 AGACGGTCAGAGGAGTTGAGTACGGGCAAGTGGTCATCGCTAATAAAAAA 150
BSNT_00065___ 151 GTGGATGAGCATGATGTGGTGCTTCCCCTTCGAAAAGTGATACGTGTGGC 200
||.|||||.||.|||||.||.|||||.||.||.||.|||||.|||||.||
BPUM_0016___y 151 GTAGATGAACACGATGTCGTTCTTCCTCTGCGTAAGGTGATTCGTGTAGC 200
BSNT_00065___ 201 TGACGAGCGCGATCTTCTCATTGTAGAAGAAAATAAACAGGAAGCA-CTA 249
.||.||..|.||||..|||||.||.||.|||||.||| |||||| |.|
BPUM_0016___y 201 AGATGAAAGAGATCGGCTCATCGTTGAGGAAAACAAA---GAAGCAGCGA 247
BSNT_00065___ 250 T--CAGCATTTGATA----TCTGCCAAAAGAAAGTGATTGAGCATGG-CT 292
| ||||.||||||| |||.| ||||.||.|.|||.||||| ||
BPUM_0016___y 248 TGACAGCCTTTGATACATGTCTTC----AGAAGGTAAGTGAACATGGTCT 293
BSNT_00065___ 293 TGGATATGAAGCTGGTCGATGTTGAATTCACGTTTGATCGCAATAAAGTC 342
| ||.|||||||||||.|||||||||||.||.|||||.||.||.||.|||
BPUM_0016___y 294 T-GAAATGAAGCTGGTTGATGTTGAATTTACATTTGACCGAAACAAGGTC 342
BSNT_00065___ 343 ATTTTTTACTTCACTGCTGACGGCCGAGTCGACTTTAGAGAGCTTGTAAA 392
||.||.||||||||.||.||.|||.||||.||.||..|.|||||.||.||
BPUM_0016___y 343 ATCTTCTACTTCACAGCGGATGGCAGAGTGGATTTCCGTGAGCTAGTGAA 392
BSNT_00065___ 393 GGATTTGGCTTCTATCTTTAAGACAAGAATTGAGCTGCGCCAAATCGGAG 442
||||.|.||.||.||.||.||.|||||||||||.||.|||||.||.||.|
BPUM_0016___y 393 GGATCTTGCATCGATTTTCAAAACAAGAATTGAACTTCGCCAGATTGGTG 442
BSNT_00065___ 443 TGAGGGATGAGGCAAAAATGCTCGGAGGAATCGGTCCTTGCGGAAGAATG 492
|.|||||.||||||||||||||.||.||.||.||.||||||||..|||||
BPUM_0016___y 443 TAAGGGACGAGGCAAAAATGCTGGGGGGCATAGGACCTTGCGGGCGAATG 492
BSNT_00065___ 493 CTTTGCTGTTCAACGTTTCTT-GGAGATTTTGAACCCGTTTCCATTAAAA 541
|||||||||||.|| .||||| |||||.||||||||.||.||||||||.|
BPUM_0016___y 493 CTTTGCTGTTCGAC-ATTCTTAGGAGACTTTGAACCAGTATCCATTAAGA 541
BSNT_00065___ 542 TGGCCAAGGATCAGAACTTGTCTTTAAATCCTACGAAGATTTCGGGTCTT 591
||||.||.|||||.|||.||||..|||||||.||.||.|||||.||.|||
BPUM_0016___y 542 TGGCAAAAGATCAAAACCTGTCGCTAAATCCCACAAAAATTTCAGGGCTT 591
BSNT_00065___ 592 TGCGGACGATTGATGTGCTGTCTAAAATATGAGAACGATGAGTATGAGAC 641
|||||.||.||||||||.||..|.|||||||||||||||||||||||.||
BPUM_0016___y 592 TGCGGTCGTTTGATGTGTTGCTTGAAATATGAGAACGATGAGTATGAAAC 641
BSNT_00065___ 642 GGCAAAAGAACAGCTTCCGGATATAGGAGAAATGATTACGACAGCAAAC- 690
|||.||||||||..|.||||||||.||.||||.|||| |||||
BPUM_0016___y 642 GGCGAAAGAACAATTGCCGGATATCGGTGAAACGATT-------CAAACA 684
BSNT_00065___ 691 ------GGTCCCGCGAAGGTCGTCGGACTAAATATTCTGGAACGGGTGCT 734
||..|.||.|||||.||.||.||.||.|||.|.|||||..|..|
BPUM_0016___y 685 TCTAGTGGCTCTGCAAAGGTAGTAGGGCTCAACATTTTAGAACGAATTTT 734
BSNT_00065___ 735 TCAGGTGGAACTGATAAACCG----TGAAAAAGTGATAGAATATACTTGG 780
.||.||.|| ||.||||| .||||||||||||||||||||||||
BPUM_0016___y 735 GCAAGTTGA----ATTAACCGGACAAGAAAAAGTGATAGAATATACTTGG 780
BSNT_00065___ 781 GAAGAGCTCTTGGAAGAGGGCGTCGTATCCGCACAAACCACAGATTAA 828
|||||..|.||..||||.|||||.|||||.||||||||.||.||.|||
BPUM_0016___y 781 GAAGAATTATTACAAGAAGGCGTTGTATCTGCACAAACAACTGAGTAA 828
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