Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00062 and BPUM_0014
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00062___yaaR.1.24716.seq
# -bsequence dna-align/BPUM_0014___yaaR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00062___yaaR-BPUM_0014___yaaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00062___yaaR-BPUM_0014___yaaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00062___yaaR
# 2: BPUM_0014___yaaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 473
# Identity: 324/473 (68.5%)
# Similarity: 324/473 (68.5%)
# Gaps: 64/473 (13.5%)
# Score: 1096.0
#
#
#=======================================
BSNT_00062___ 1 GTGAAAATTAATAAAGATATACG--TACATTTATAGATAA---------- 38
||||||||||||.|||||||.|| |.| ||.||||.||
BPUM_0014___y 1 GTGAAAATTAATCAAGATATGCGGCTGC--TTTTAGAAAAGCGTGAACTC 48
BSNT_00062___ 39 --------TAAGCAGATTCCCTCTGTGAAAACATCTGAGATCACGGCATC 80
|||| .||..|| |||||||| ||.||
BPUM_0014___y 49 CAAGGCATTAAG-GGAAGCC--------AAACATCT---------GCCTC 80
BSNT_00062___ 81 GTTTAAAACATCAATGGAAAACCAAAGCAGCAAAATGAAGCTT-GATCAG 129
.||||||.|.||.|||||.|..|||||..|.|||||| .|||| ||.|||
BPUM_0014___y 81 CTTTAAAGCTTCGATGGAGACGCAAAGTGGTAAAATG-CGCTTAGAGCAG 129
BSNT_00062___ 130 CTTACCAGGCTGTTAT-----CTGATATAGAAGCATTCGGAAAAAGGCTA 174
|| |.|.||||| .||||||.||||..|||||.||||.|||.
BPUM_0014___y 130 CT-----GACGGTTATGCTGAGTGATATCGAAGTGTTCGGTAAAAAGCTG 174
BSNT_00062___ 175 ACGAAATCTCGGAATTTTAAAGACTTAGCGAGATTTAAAGGACTTGTGAA 224
.|.||.||.||.|||||.||.|||||.||.||.|||||||||||||||||
BPUM_0014___y 175 GCAAAGTCACGAAATTTAAAGGACTTGGCTAGGTTTAAAGGACTTGTGAA 224
BSNT_00062___ 225 ACGTTTTGTCAAAGAAGCTGTGGACAGCGGCCTTTCACAT---GAAACAT 271
.||.|||||.|||||..|.||.||.|..|| .|.|.|| |||||||
BPUM_0014___y 225 GCGCTTTGTGAAAGAGACAGTCGATAATGG---ATTAAATTTAGAAACAT 271
BSNT_00062___ 272 CGAAAAGCTTTGACCTTTACGGGAACAGCA-GAACGCTGGGACTT--GTG 318
|.|.|||||||||..||||.||.|||| || |.||.||.| ||| ||.
BPUM_0014___y 272 CAAGAAGCTTTGATATTTATGGCAACA-CACGTACACTCG--CTTTAGTC 318
BSNT_00062___ 319 AAAGAAATAGATGACAAATTGATACAGCTTACGGAAGAGATGATGGATCA 368
||||.|.|||||||.||..||||..|..|.||.||.||.|||||||||||
BPUM_0014___y 319 AAAGCATTAGATGAAAAGCTGATCGAATTAACAGAGGATATGATGGATCA 368
BSNT_00062___ 369 GGAAAAACCGGCAATTGATTTGCTGGAGCGTATTGGCGAAATAAAAGGTT 418
.||.|||||..|.||.||||||||.||.||||||||.|||||||||||||
BPUM_0014___y 369 AGAGAAACCATCTATCGATTTGCTTGAACGTATTGGAGAAATAAAAGGTT 418
BSNT_00062___ 419 TATTAATTAACCTTTACACATAG 441
|||||||||||||||||||||||
BPUM_0014___y 419 TATTAATTAACCTTTACACATAG 441
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