Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00060 and BPUM_0012
See
Amino acid alignment /
Visit
BSNT_00060 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00060___tmk.1.24716.seq
# -bsequence dna-align/BPUM_0012___tmk.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00060___tmk-BPUM_0012___tmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00060___tmk-BPUM_0012___tmk.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00060___tmk
# 2: BPUM_0012___tmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity: 444/698 (63.6%)
# Similarity: 444/698 (63.6%)
# Gaps: 118/698 (16.9%)
# Score: 1341.5
#
#
#=======================================
BSNT_00060___ 1 ATGAGCGGTTTATTTATTACATTCGAAGGTCCTGAAGGTGCAGGAAAAAC 50
|||||||||.|.||||||||.||.|||||.||.||.|||||.||||||||
BPUM_0012___t 1 ATGAGCGGTATGTTTATTACGTTTGAAGGGCCAGAGGGTGCCGGAAAAAC 50
BSNT_00060___ 51 GACTGTTCTGCAGGAGAT-CAAAAACATACTGACA-GCAGAA---GGCCT 95
|||.|| ||| |.||| |.|| || |.|||| |..|.
BPUM_0012___t 51 GACAGT---------GATACGAAA----AGTG-CACGAAGAAATGGAACG 86
BSNT_00060___ 96 TCA---------GGTTATGGCAACTCGAGAGCCAGGCGGAATAGATATTG 136
||| .||.||||||||.||.|||||.|||||.||.||.||||
BPUM_0012___t 87 TCAAGGATATGCAGTGATGGCAACACGCGAGCCGGGCGGTATTGACATTG 136
BSNT_00060___ 137 CAGAACAAATTCGAGAGGTTATTCTGAATGAGAACAACACATTAATGGAC 186
|.||.||.||.||.||.||.|||.|.|||||.||.||.|||..||||||.
BPUM_0012___t 137 CTGAGCAGATCCGTGAAGTCATTTTAAATGAAAAAAATACAAAAATGGAT 186
BSNT_00060___ 187 CCAAAAACAGAAGCTCTCTTATATGCGGCTGCAAGGCGCCAGCATTTAGT 236
.|.||||||||.||..|.||.|||||.||.|||||..|.||||||||.|.
BPUM_0012___t 187 GCGAAAACAGAGGCATTGTTGTATGCAGCAGCAAGAAGGCAGCATTTGGC 236
BSNT_00060___ 237 TGAAAAAGTAAAACCTGCTTT---------AGA-ACAGGGGTTTATCGTT 276
||||||||||.||||.||.|| ||| ||.| |
BPUM_0012___t 237 TGAAAAAGTAGAACCGGCATTGCAGCGAGGAGAGACTG-----------T 275
BSNT_00060___ 277 CTT-TGCGACAGATTTATAGACAGTTCTCTTGCGTATCAAGGATATGCAA 325
||| ||.||..|.|||.|.||.||.||||||||.||||||||.|||||.|
BPUM_0012___t 276 CTTATGTGATCGTTTTGTTGATAGCTCTCTTGCTTATCAAGGCTATGCGA 325
BSNT_00060___ 326 GAGGACTTGGAATTGATGAGGTTCTG-TCGATTAATGAATTTGCCATTGG 374
||||.|||||||||||..|.| ||.| ||.||.||.||.|||||.||||.
BPUM_0012___t 326 GAGGGCTTGGAATTGACCAAG-TCAGATCAATAAACGACTTTGCTATTGA 374
BSNT_00060___ 375 AGATATGATGCCCCATGTAACGGTTTATTTTTCAATTGATCCGGAAGAAG 424
.|..|.||||||.||..|.|||.||||.|||||.|||...||.||.||||
BPUM_0012___t 375 TGGCACGATGCCGCAAATGACGATTTACTTTTCTATTACACCTGAGGAAG 424
BSNT_00060___ 425 GACTGAAGCGTATTTACGCAAACGGCTCACGG--GAGAAA--AACAGGCT 470
|.||.|||||.|||.||||.|| |||.|| |||||| |||.|..|
BPUM_0012___t 425 GGCTAAAGCGAATTCACGCCAA----TCAAGGAAGAGAAAAGAACCGATT 470
BSNT_00060___ 471 CGATTTAGAAAAACTGGACTTTCATACAAAAGTACAAGAAGGTTATCAAG 520
.|||.|.||.|.||||.|.|||| ||.||..||||| .||
BPUM_0012___t 471 AGATATGGAGACACTGAATTTTC----------ACCAGTTGGTTA--GAG 508
BSNT_00060___ 521 A--GCTGATGAA-----------GCGATTTCCGGAAAGATTTCA--TTCA 555
| ||| ||||| ||.||..||.|||.||||.|| ||
BPUM_0012___t 509 AAGGCT-ATGAACTTCTTATTGCGCAATCACCAGAACGATTCCACGTT-- 555
BSNT_00060___ 556 GTTGATGCCGGGCAATCCAAAGGCCTCGTCG-TTCAGGATGTTCTA---- 600
||.||||| |.|.|| |.|| |.||||||| ||||
BPUM_0012___t 556 GTGGATGC-------TTCTAA------GCCGATGCAGGATG-TCTATGAA 591
BSNT_00060___ 601 -AAG--------GTGATCGATGAAGCGTTGAAAAAAATTCAATTGTGA 639
||| |||||..|.||..|.||.||.||||.||||.|.|||
BPUM_0012___t 592 GAAGTACTTCGAGTGATTCAGGACACATTAAAGAAAAATCAAATATGA 639
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.