Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00060 and BPUM_0012

See Amino acid alignment / Visit BSNT_00060 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00060___tmk.1.24716.seq
#    -bsequence dna-align/BPUM_0012___tmk.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00060___tmk-BPUM_0012___tmk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00060___tmk-BPUM_0012___tmk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00060___tmk
# 2: BPUM_0012___tmk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity:     444/698 (63.6%)
# Similarity:   444/698 (63.6%)
# Gaps:         118/698 (16.9%)
# Score: 1341.5
# 
#
#=======================================

BSNT_00060___      1 ATGAGCGGTTTATTTATTACATTCGAAGGTCCTGAAGGTGCAGGAAAAAC     50
                     |||||||||.|.||||||||.||.|||||.||.||.|||||.||||||||
BPUM_0012___t      1 ATGAGCGGTATGTTTATTACGTTTGAAGGGCCAGAGGGTGCCGGAAAAAC     50

BSNT_00060___     51 GACTGTTCTGCAGGAGAT-CAAAAACATACTGACA-GCAGAA---GGCCT     95
                     |||.||         ||| |.|||    |.|| || |.||||   |..|.
BPUM_0012___t     51 GACAGT---------GATACGAAA----AGTG-CACGAAGAAATGGAACG     86

BSNT_00060___     96 TCA---------GGTTATGGCAACTCGAGAGCCAGGCGGAATAGATATTG    136
                     |||         .||.||||||||.||.|||||.|||||.||.||.||||
BPUM_0012___t     87 TCAAGGATATGCAGTGATGGCAACACGCGAGCCGGGCGGTATTGACATTG    136

BSNT_00060___    137 CAGAACAAATTCGAGAGGTTATTCTGAATGAGAACAACACATTAATGGAC    186
                     |.||.||.||.||.||.||.|||.|.|||||.||.||.|||..||||||.
BPUM_0012___t    137 CTGAGCAGATCCGTGAAGTCATTTTAAATGAAAAAAATACAAAAATGGAT    186

BSNT_00060___    187 CCAAAAACAGAAGCTCTCTTATATGCGGCTGCAAGGCGCCAGCATTTAGT    236
                     .|.||||||||.||..|.||.|||||.||.|||||..|.||||||||.|.
BPUM_0012___t    187 GCGAAAACAGAGGCATTGTTGTATGCAGCAGCAAGAAGGCAGCATTTGGC    236

BSNT_00060___    237 TGAAAAAGTAAAACCTGCTTT---------AGA-ACAGGGGTTTATCGTT    276
                     ||||||||||.||||.||.||         ||| ||.|           |
BPUM_0012___t    237 TGAAAAAGTAGAACCGGCATTGCAGCGAGGAGAGACTG-----------T    275

BSNT_00060___    277 CTT-TGCGACAGATTTATAGACAGTTCTCTTGCGTATCAAGGATATGCAA    325
                     ||| ||.||..|.|||.|.||.||.||||||||.||||||||.|||||.|
BPUM_0012___t    276 CTTATGTGATCGTTTTGTTGATAGCTCTCTTGCTTATCAAGGCTATGCGA    325

BSNT_00060___    326 GAGGACTTGGAATTGATGAGGTTCTG-TCGATTAATGAATTTGCCATTGG    374
                     ||||.|||||||||||..|.| ||.| ||.||.||.||.|||||.||||.
BPUM_0012___t    326 GAGGGCTTGGAATTGACCAAG-TCAGATCAATAAACGACTTTGCTATTGA    374

BSNT_00060___    375 AGATATGATGCCCCATGTAACGGTTTATTTTTCAATTGATCCGGAAGAAG    424
                     .|..|.||||||.||..|.|||.||||.|||||.|||...||.||.||||
BPUM_0012___t    375 TGGCACGATGCCGCAAATGACGATTTACTTTTCTATTACACCTGAGGAAG    424

BSNT_00060___    425 GACTGAAGCGTATTTACGCAAACGGCTCACGG--GAGAAA--AACAGGCT    470
                     |.||.|||||.|||.||||.||    |||.||  ||||||  |||.|..|
BPUM_0012___t    425 GGCTAAAGCGAATTCACGCCAA----TCAAGGAAGAGAAAAGAACCGATT    470

BSNT_00060___    471 CGATTTAGAAAAACTGGACTTTCATACAAAAGTACAAGAAGGTTATCAAG    520
                     .|||.|.||.|.||||.|.||||          ||.||..|||||  .||
BPUM_0012___t    471 AGATATGGAGACACTGAATTTTC----------ACCAGTTGGTTA--GAG    508

BSNT_00060___    521 A--GCTGATGAA-----------GCGATTTCCGGAAAGATTTCA--TTCA    555
                     |  ||| |||||           ||.||..||.|||.||||.||  ||  
BPUM_0012___t    509 AAGGCT-ATGAACTTCTTATTGCGCAATCACCAGAACGATTCCACGTT--    555

BSNT_00060___    556 GTTGATGCCGGGCAATCCAAAGGCCTCGTCG-TTCAGGATGTTCTA----    600
                     ||.|||||       |.|.||      |.|| |.||||||| ||||    
BPUM_0012___t    556 GTGGATGC-------TTCTAA------GCCGATGCAGGATG-TCTATGAA    591

BSNT_00060___    601 -AAG--------GTGATCGATGAAGCGTTGAAAAAAATTCAATTGTGA    639
                      |||        |||||..|.||..|.||.||.||||.||||.|.|||
BPUM_0012___t    592 GAAGTACTTCGAGTGATTCAGGACACATTAAAGAAAAATCAAATATGA    639


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