Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00059 and BPUM_0011

See Amino acid alignment / Visit BSNT_00059 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00059___yaaO.1.24716.seq
#    -bsequence dna-align/BPUM_0011___yaaO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00059___yaaO-BPUM_0011___yaaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00059___yaaO-BPUM_0011___yaaO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00059___yaaO
# 2: BPUM_0011___yaaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1628
# Identity:     933/1628 (57.3%)
# Similarity:   933/1628 (57.3%)
# Gaps:         403/1628 (24.8%)
# Score: 2402.5
# 
#
#=======================================

BSNT_00059___      1 ATGAACACACCTTTATATAAAGCATTAATTCAACATGCGAGAAGA-AATT     49
                     .||||.|||||||||||||.|||||||...||.|||||| |||.| ||..
BPUM_0011___y      1 TTGAAAACACCTTTATATACAGCATTAGCACAGCATGCG-GAAAAGAAGC     49

BSNT_00059___     50 CTCATTCATTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT     99
                     ||.||||.|||||.|||||.||||||||||||||||||||||||||||||
BPUM_0011___y     50 CTTATTCTTTTCACGTTCCAGGACATCACAATGGAGATGTCTTTTTTGAT     99

BSNT_00059___    100 GACGCTAAG---TCAATATTCGATCCGCTTC------TCACCATTGATGT    140
                     ||.|| |.|   |||.|||       |||||      |||.| |.|||||
BPUM_0011___y    100 GAGGC-ACGGTCTCACTAT-------GCTTCAATTCTTCAGC-TGGATGT    140

BSNT_00059___    141 AACTGAACTGGCAGGATTGGATGATCTCCATCATCCTTCCGGGGTGATTA    190
                     .||.||.||.|.|||..|.||||||||.|||||.||..|.|||||.||..
BPUM_0011___y    141 GACAGAGCTTGAAGGTCTTGATGATCTTCATCACCCGACTGGGGTCATCC    190

BSNT_00059___    191 AGGAAGCTCAGGAGCTT--GTCAGTCAATTATATG-----GATCGGCGGA    233
                     |.||.|  |||.|..||  .|.|.|.|..||||||     ||||     |
BPUM_0011___y    191 AAGAGG--CAGAACATTTATTAACTAAGCTATATGATTCAGATC-----A    233

BSNT_00059___    234 AAGTTTTTTTCTGGTAAATGGTACGACTGTCGGAAACTTAGCGATGATTT    283
                     |||.||.||.||.||.|||||.||.||.|||||||||||.||||||    
BPUM_0011___y    234 AAGCTTCTTCCTTGTGAATGGCACAACAGTCGGAAACTTGGCGATG----    279

BSNT_00059___    284 TATCTGTTTGTGA--AC-----------CTGGTGATACAATTCTGGTTCA    320
                              ||||  ||           |.||.||...||||.|.||.||
BPUM_0011___y    280 ---------GTGATGACAGCATGCCGCACGGGAGACGAAATTTTCGTCCA    320

BSNT_00059___    321 AAGAAACTGTCATAAATCTGTATTTCATGCTGTTGATTTGGCCGGTGCTA    370
                     ..||||.||.|||||.|||||.||||||||..|.||..|.||.||.||.|
BPUM_0011___y    321 GCGAAATTGCCATAAGTCTGTCTTTCATGCGATCGAACTTGCAGGGGCAA    370

BSNT_00059___    371 AGCCGGTTTATCTTG---CAC-CTGACGTTGATTCAGCGA----TGCATG    412
                     .|||    |||.|||   .|| ||||    |||..|.|.|    ||||.|
BPUM_0011___y    371 CGCC----TATTTTGATAGACGCTGA----GATAGACCCACACTTGCACG    412

BSNT_00059___    413 TGCCTACGCATGTTCCGCTTGGA----ACAATTAAAGAGGCCCTGGAAGC    458
                     |.||.||.|||||..|    |||    |||.|.|.|.|.|||.|.|.|..
BPUM_0011___y    413 TTCCAACACATGTGGC----GGAAGATACAGTGAGAAAAGCCATAGCAAA    458

BSNT_00059___    459 ATATCCAGA-TGCGAAAGGC------TTGGTACTGACCAATCCGACATAT    501
                     |.||||..| |||  |.|||      ||     ||||..||||||..||.
BPUM_0011___y    459 ACATCCTCATTGC--AGGGCAATCATTT-----TGACTTATCCGAACTAC    501

BSNT_00059___    502 TACGGACATAGTGCTGATTTGACTGAGATCATTA---CTGAAGCCCA---    545
                     |||||||||...||||||||          ||||   ||||..|.||   
BPUM_0011___y    502 TACGGACATGCAGCTGATTT----------ATTAAAGCTGATTCACATGT    541

BSNT_00059___    546 -TCATTA---CGGGATTCCTGTTTTGGTCGATGAAGCGCATGGCGCACAT    591
                      ||||.|   .||.||...|||.|||||.|||||.||.|||||.||.|||
BPUM_0011___y    542 GTCATGAAGCAGGTATGATTGTGTTGGTTGATGAGGCACATGGTGCGCAT    591

BSNT_00059___    592 TTTATTTTAGGTGAGCCTTTTCCGGTCTCAGCT-TTAAAAATGGGGGCAG    640
                     |||.|.|||||.|.|...||.||....||.||| ||....|| ||.||.|
BPUM_0011___y    592 TTTGTATTAGGCGGGGGCTTCCCCCCATCGGCTCTTTCCTAT-GGAGCGG    640

BSNT_00059___    641 ATATTGTTGTTCAGTCGGCCCACAAAACGTTGCCTGCCATGACGATGGGT    690
                     |..|.||.||.||.||.||.||.|||||..|.||.||.|||||.||||||
BPUM_0011___y    641 ACGTGGTGGTACAATCAGCACATAAAACCCTTCCGGCAATGACAATGGGT    690

BSNT_00059___    691 TCTTATTTGCATCTTAACAGCAGCTGCAGGATTAACAGGGATCG----GG    736
                     ||.|||.|.||||||           ||.|       ||||.||    |.
BPUM_0011___y    691 TCCTATCTTCATCTT-----------CAAG-------GGGACCGAATCGA    722

BSNT_00059___    737 TG-GCAGAGTATTTAAA---------CCGAT--TACAAAGCAG--CAGCC    772
                     || |.|||| |||.|||         .||||  |.|||||.||  | |||
BPUM_0011___y    723 TGCGAAGAG-ATTGAAAATCTTGCTGACGATGCTTCAAAGTAGTTC-GCC    770

BSNT_00059___    773 CGTCTTATCCGATAATGGCTTCGTTAGATATTGCCCGCGCTTATGTACAG    822
                     | ||||||||.||.|||||.||.||||||.|.||..|.||||||||..||
BPUM_0011___y    771 C-TCTTATCCCATTATGGCCTCATTAGATGTAGCAAGAGCTTATGTCGAG    819

BSNT_00059___    823 CATATTATAGAAGAACAAAAGCTTTCTGACATTCTGCAGCGGATACAAAC    872
                     .|.||.|.|||     |||||     .||||||       ||||..||.|
BPUM_0011___y    820 GAGATCAAAGA-----AAAAG-----GGACATT-------GGATGTAATC    852

BSNT_00059___    873 A-----------------CTTAAA--------CAAACGTTTGATTCA-CT    896
                     |                 ||.|||        |||.|||.|||.||| ||
BPUM_0011___y    853 ATGAAAGAACTGACAGAGCTGAAAGATCAGTTCAACCGTCTGACTCACCT    902

BSNT_00059___    897 TACAAATGCAGAAGCTGTTAACCCTGCTAATCCACTGATCATCACGGACC    946
                     |         ||||..|||.|.||.|  ||| ||.||  ||| .|.||.|
BPUM_0011___y    903 T---------GAAGTGGTTGAGCCAG--AAT-CATTG--CAT-TCCGATC    937

BSNT_00059___    947 CGCTGAA--GC-TCACAATTCGTT---CAAAACG-CGGGCATTCTGGCTA    989
                     |..|.||  || ||   |||||.|   |||||.| |.|.||    ||  .
BPUM_0011___y    938 CATTAAAATGCGTC---ATTCGATCAACAAAAGGACTGACA----GG--T    978

BSNT_00059___    990 TACG--CTGCAAAGCA--TATTAGA--GCGTGCCAACATATTCA--CTGA   1031
                     ||||  ||  ||||||  ||.|.||  ..|||    .||.||||  |.||
BPUM_0011___y    979 TACGAACT--AAAGCAGGTACTTGAATCAGTG----GATGTTCATCCAGA   1022

BSNT_00059___   1032 GCTTGCTGATGAAAATCAAGTTCTGCTCGTTCT---CCCATTGGGGGGAA   1078
                     ||||||.||.|||.||||.|||.|.||.||.||   ||         .|.
BPUM_0011___y   1023 GCTTGCGGACGAACATCAGGTTTTACTTGTACTTAGCC---------TAG   1063

BSNT_00059___   1079 AACGGAGAATAAATGCTGAA-----ACCATTAGAAGCATTGATGAAAAGA   1123
                     |||.|||          |||     .||.||..||||          |||
BPUM_0011___y   1064 AACAGAG----------GAAGGACGTCCCTTTCAAGC----------AGA   1093

BSNT_00059___   1124 TTGAGAAAACGCCTCCGGATCAGGCGTTTGTTTCTGCAG-AATGGGGAGT   1172
                     |               .||||||||       |||..|| ||     |||
BPUM_0011___y   1094 T---------------CGATCAGGC-------TCTTAAGCAA-----AGT   1116

BSNT_00059___   1173 G---CAGCCTGTTACTGTCTTGCCT---------------TATCCAA---   1201
                     |   ||             ||| ||               |||||.|   
BPUM_0011___y   1117 GATTCA-------------TTG-CTCAAAGGGAAAAAATATATCCGAAAT   1152

BSNT_00059___   1202 -AAAAGG----TCTT---AC--ATTCGTTTAAGAAAGA-ATA-----TGT   1235
                      |||.||    ||||   ||  ||...||.||..|||| |||     |||
BPUM_0011___y   1153 GAAACGGTATCTCTTGAGACTGATATATTAAATCAAGACATAGAGGCTGT   1202

BSNT_00059___   1236 GGACTTTGAGGAAGCAACTGGCCGGCTGAATGCAGAAGATATCATCCCTT   1285
                     ....|||||..|||||||.|||.||.|||.|||||||...||.||.||.|
BPUM_0011___y   1203 CCCATTTGAACAAGCAACAGGCAGGGTGAGTGCAGAATCCATTATTCCCT   1252

BSNT_00059___   1286 ATCCTCCGGGTATCCC---GATGATTATGGCGGGAGAAAGAATAACAAAA   1332
                     ||||.||.||.||.||   ||||||||   .||||||..|.||...||||
BPUM_0011___y   1253 ATCCACCTGGAATTCCTTTGATGATTA---AGGGAGAGCGTATTGAAAAA   1299

BSNT_00059___   1333 GAAAGTGTGCAAA------AGCTCAGCC----GCTTGATCAGCATGAAAA   1372
                     |||      ||||      .|.|.||||    |||||.||         |
BPUM_0011___y   1300 GAA------CAAATTGAGGCGTTAAGCCGTTTGCTTGGTC---------A   1334

BSNT_00059___   1373 CG-----CATGTTCAAGGGAAT-ATGAAAATCA-AAGAGAAACAACTACT   1415
                     ||     |||.||||||..|.| |.|..|.||| .||||||  ||.||..
BPUM_0011___y   1335 CGAGGTTCATATTCAAGCAAGTCAGGTCATTCATCAGAGAA--AATTATA   1382

BSNT_00059___   1416 TGTTTATATAGAAGAGGAGAAATCATGA   1443
                     ||||||||||||||||||||.|..||||
BPUM_0011___y   1383 TGTTTATATAGAAGAGGAGACACTATGA   1410


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