Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00059 and BPUM_0011
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:59
# Commandline: needle
# -asequence dna-align/BSNT_00059___yaaO.1.24716.seq
# -bsequence dna-align/BPUM_0011___yaaO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00059___yaaO-BPUM_0011___yaaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00059___yaaO-BPUM_0011___yaaO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00059___yaaO
# 2: BPUM_0011___yaaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1628
# Identity: 933/1628 (57.3%)
# Similarity: 933/1628 (57.3%)
# Gaps: 403/1628 (24.8%)
# Score: 2402.5
#
#
#=======================================
BSNT_00059___ 1 ATGAACACACCTTTATATAAAGCATTAATTCAACATGCGAGAAGA-AATT 49
.||||.|||||||||||||.|||||||...||.|||||| |||.| ||..
BPUM_0011___y 1 TTGAAAACACCTTTATATACAGCATTAGCACAGCATGCG-GAAAAGAAGC 49
BSNT_00059___ 50 CTCATTCATTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT 99
||.||||.|||||.|||||.||||||||||||||||||||||||||||||
BPUM_0011___y 50 CTTATTCTTTTCACGTTCCAGGACATCACAATGGAGATGTCTTTTTTGAT 99
BSNT_00059___ 100 GACGCTAAG---TCAATATTCGATCCGCTTC------TCACCATTGATGT 140
||.|| |.| |||.||| ||||| |||.| |.|||||
BPUM_0011___y 100 GAGGC-ACGGTCTCACTAT-------GCTTCAATTCTTCAGC-TGGATGT 140
BSNT_00059___ 141 AACTGAACTGGCAGGATTGGATGATCTCCATCATCCTTCCGGGGTGATTA 190
.||.||.||.|.|||..|.||||||||.|||||.||..|.|||||.||..
BPUM_0011___y 141 GACAGAGCTTGAAGGTCTTGATGATCTTCATCACCCGACTGGGGTCATCC 190
BSNT_00059___ 191 AGGAAGCTCAGGAGCTT--GTCAGTCAATTATATG-----GATCGGCGGA 233
|.||.| |||.|..|| .|.|.|.|..|||||| |||| |
BPUM_0011___y 191 AAGAGG--CAGAACATTTATTAACTAAGCTATATGATTCAGATC-----A 233
BSNT_00059___ 234 AAGTTTTTTTCTGGTAAATGGTACGACTGTCGGAAACTTAGCGATGATTT 283
|||.||.||.||.||.|||||.||.||.|||||||||||.||||||
BPUM_0011___y 234 AAGCTTCTTCCTTGTGAATGGCACAACAGTCGGAAACTTGGCGATG---- 279
BSNT_00059___ 284 TATCTGTTTGTGA--AC-----------CTGGTGATACAATTCTGGTTCA 320
|||| || |.||.||...||||.|.||.||
BPUM_0011___y 280 ---------GTGATGACAGCATGCCGCACGGGAGACGAAATTTTCGTCCA 320
BSNT_00059___ 321 AAGAAACTGTCATAAATCTGTATTTCATGCTGTTGATTTGGCCGGTGCTA 370
..||||.||.|||||.|||||.||||||||..|.||..|.||.||.||.|
BPUM_0011___y 321 GCGAAATTGCCATAAGTCTGTCTTTCATGCGATCGAACTTGCAGGGGCAA 370
BSNT_00059___ 371 AGCCGGTTTATCTTG---CAC-CTGACGTTGATTCAGCGA----TGCATG 412
.||| |||.||| .|| |||| |||..|.|.| ||||.|
BPUM_0011___y 371 CGCC----TATTTTGATAGACGCTGA----GATAGACCCACACTTGCACG 412
BSNT_00059___ 413 TGCCTACGCATGTTCCGCTTGGA----ACAATTAAAGAGGCCCTGGAAGC 458
|.||.||.|||||..| ||| |||.|.|.|.|.|||.|.|.|..
BPUM_0011___y 413 TTCCAACACATGTGGC----GGAAGATACAGTGAGAAAAGCCATAGCAAA 458
BSNT_00059___ 459 ATATCCAGA-TGCGAAAGGC------TTGGTACTGACCAATCCGACATAT 501
|.||||..| ||| |.||| || ||||..||||||..||.
BPUM_0011___y 459 ACATCCTCATTGC--AGGGCAATCATTT-----TGACTTATCCGAACTAC 501
BSNT_00059___ 502 TACGGACATAGTGCTGATTTGACTGAGATCATTA---CTGAAGCCCA--- 545
|||||||||...|||||||| |||| ||||..|.||
BPUM_0011___y 502 TACGGACATGCAGCTGATTT----------ATTAAAGCTGATTCACATGT 541
BSNT_00059___ 546 -TCATTA---CGGGATTCCTGTTTTGGTCGATGAAGCGCATGGCGCACAT 591
||||.| .||.||...|||.|||||.|||||.||.|||||.||.|||
BPUM_0011___y 542 GTCATGAAGCAGGTATGATTGTGTTGGTTGATGAGGCACATGGTGCGCAT 591
BSNT_00059___ 592 TTTATTTTAGGTGAGCCTTTTCCGGTCTCAGCT-TTAAAAATGGGGGCAG 640
|||.|.|||||.|.|...||.||....||.||| ||....|| ||.||.|
BPUM_0011___y 592 TTTGTATTAGGCGGGGGCTTCCCCCCATCGGCTCTTTCCTAT-GGAGCGG 640
BSNT_00059___ 641 ATATTGTTGTTCAGTCGGCCCACAAAACGTTGCCTGCCATGACGATGGGT 690
|..|.||.||.||.||.||.||.|||||..|.||.||.|||||.||||||
BPUM_0011___y 641 ACGTGGTGGTACAATCAGCACATAAAACCCTTCCGGCAATGACAATGGGT 690
BSNT_00059___ 691 TCTTATTTGCATCTTAACAGCAGCTGCAGGATTAACAGGGATCG----GG 736
||.|||.|.|||||| ||.| ||||.|| |.
BPUM_0011___y 691 TCCTATCTTCATCTT-----------CAAG-------GGGACCGAATCGA 722
BSNT_00059___ 737 TG-GCAGAGTATTTAAA---------CCGAT--TACAAAGCAG--CAGCC 772
|| |.|||| |||.||| .|||| |.|||||.|| | |||
BPUM_0011___y 723 TGCGAAGAG-ATTGAAAATCTTGCTGACGATGCTTCAAAGTAGTTC-GCC 770
BSNT_00059___ 773 CGTCTTATCCGATAATGGCTTCGTTAGATATTGCCCGCGCTTATGTACAG 822
| ||||||||.||.|||||.||.||||||.|.||..|.||||||||..||
BPUM_0011___y 771 C-TCTTATCCCATTATGGCCTCATTAGATGTAGCAAGAGCTTATGTCGAG 819
BSNT_00059___ 823 CATATTATAGAAGAACAAAAGCTTTCTGACATTCTGCAGCGGATACAAAC 872
.|.||.|.||| ||||| .|||||| ||||..||.|
BPUM_0011___y 820 GAGATCAAAGA-----AAAAG-----GGACATT-------GGATGTAATC 852
BSNT_00059___ 873 A-----------------CTTAAA--------CAAACGTTTGATTCA-CT 896
| ||.||| |||.|||.|||.||| ||
BPUM_0011___y 853 ATGAAAGAACTGACAGAGCTGAAAGATCAGTTCAACCGTCTGACTCACCT 902
BSNT_00059___ 897 TACAAATGCAGAAGCTGTTAACCCTGCTAATCCACTGATCATCACGGACC 946
| ||||..|||.|.||.| ||| ||.|| ||| .|.||.|
BPUM_0011___y 903 T---------GAAGTGGTTGAGCCAG--AAT-CATTG--CAT-TCCGATC 937
BSNT_00059___ 947 CGCTGAA--GC-TCACAATTCGTT---CAAAACG-CGGGCATTCTGGCTA 989
|..|.|| || || |||||.| |||||.| |.|.|| || .
BPUM_0011___y 938 CATTAAAATGCGTC---ATTCGATCAACAAAAGGACTGACA----GG--T 978
BSNT_00059___ 990 TACG--CTGCAAAGCA--TATTAGA--GCGTGCCAACATATTCA--CTGA 1031
|||| || |||||| ||.|.|| ..||| .||.|||| |.||
BPUM_0011___y 979 TACGAACT--AAAGCAGGTACTTGAATCAGTG----GATGTTCATCCAGA 1022
BSNT_00059___ 1032 GCTTGCTGATGAAAATCAAGTTCTGCTCGTTCT---CCCATTGGGGGGAA 1078
||||||.||.|||.||||.|||.|.||.||.|| || .|.
BPUM_0011___y 1023 GCTTGCGGACGAACATCAGGTTTTACTTGTACTTAGCC---------TAG 1063
BSNT_00059___ 1079 AACGGAGAATAAATGCTGAA-----ACCATTAGAAGCATTGATGAAAAGA 1123
|||.||| ||| .||.||..|||| |||
BPUM_0011___y 1064 AACAGAG----------GAAGGACGTCCCTTTCAAGC----------AGA 1093
BSNT_00059___ 1124 TTGAGAAAACGCCTCCGGATCAGGCGTTTGTTTCTGCAG-AATGGGGAGT 1172
| .|||||||| |||..|| || |||
BPUM_0011___y 1094 T---------------CGATCAGGC-------TCTTAAGCAA-----AGT 1116
BSNT_00059___ 1173 G---CAGCCTGTTACTGTCTTGCCT---------------TATCCAA--- 1201
| || ||| || |||||.|
BPUM_0011___y 1117 GATTCA-------------TTG-CTCAAAGGGAAAAAATATATCCGAAAT 1152
BSNT_00059___ 1202 -AAAAGG----TCTT---AC--ATTCGTTTAAGAAAGA-ATA-----TGT 1235
|||.|| |||| || ||...||.||..|||| ||| |||
BPUM_0011___y 1153 GAAACGGTATCTCTTGAGACTGATATATTAAATCAAGACATAGAGGCTGT 1202
BSNT_00059___ 1236 GGACTTTGAGGAAGCAACTGGCCGGCTGAATGCAGAAGATATCATCCCTT 1285
....|||||..|||||||.|||.||.|||.|||||||...||.||.||.|
BPUM_0011___y 1203 CCCATTTGAACAAGCAACAGGCAGGGTGAGTGCAGAATCCATTATTCCCT 1252
BSNT_00059___ 1286 ATCCTCCGGGTATCCC---GATGATTATGGCGGGAGAAAGAATAACAAAA 1332
||||.||.||.||.|| |||||||| .||||||..|.||...||||
BPUM_0011___y 1253 ATCCACCTGGAATTCCTTTGATGATTA---AGGGAGAGCGTATTGAAAAA 1299
BSNT_00059___ 1333 GAAAGTGTGCAAA------AGCTCAGCC----GCTTGATCAGCATGAAAA 1372
||| |||| .|.|.|||| |||||.|| |
BPUM_0011___y 1300 GAA------CAAATTGAGGCGTTAAGCCGTTTGCTTGGTC---------A 1334
BSNT_00059___ 1373 CG-----CATGTTCAAGGGAAT-ATGAAAATCA-AAGAGAAACAACTACT 1415
|| |||.||||||..|.| |.|..|.||| .|||||| ||.||..
BPUM_0011___y 1335 CGAGGTTCATATTCAAGCAAGTCAGGTCATTCATCAGAGAA--AATTATA 1382
BSNT_00059___ 1416 TGTTTATATAGAAGAGGAGAAATCATGA 1443
||||||||||||||||||||.|..||||
BPUM_0011___y 1383 TGTTTATATAGAAGAGGAGACACTATGA 1410
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