Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00057 and BPUM_0009

See Amino acid alignment / Visit BSNT_00057 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:20:59
# Commandline: needle
#    -asequence dna-align/BSNT_00057___xpaC.1.24716.seq
#    -bsequence dna-align/BPUM_0009___xpaC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00057___xpaC-BPUM_0009___xpaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00057___xpaC-BPUM_0009___xpaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00057___xpaC
# 2: BPUM_0009___xpaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity:     386/703 (54.9%)
# Similarity:   386/703 (54.9%)
# Gaps:         176/703 (25.0%)
# Score: 888.5
# 
#
#=======================================

BSNT_00057___      1 ATGCAGAGAT-----TTTTTCACTTTTTGATGTGGAGTTTAA----CTAG     41
                     ||   ||.||     ||||..||||||  ||.|||   |..|    ||  
BPUM_0009___x      1 AT---GAAATCAATCTTTTATACTTTT--ATATGG---TCCATCCTCT--     40

BSNT_00057___     42 CAGTGCGACTTTTGTTTTCATTGGAATATTGAGCTTTTTTGGTTTAAACC     91
                          |.|||||| |||||             ||  ||.||.|||.||||
BPUM_0009___x     41 -----CTACTTTT-TTTTC-------------GC--TTGTGATTTTAACC     69

BSNT_00057___     92 AGTC--------GCTTTT---------------TTTATCTATTGTTTATG    118
                      |||        |.|.||               .|||||.||..|.||||
BPUM_0009___x     70 -GTCAGTATAGGGGTCTTCCATCATCATGCTGGATTATCGATACTGTATG    118

BSNT_00057___    119 -----------------GGCTTGCTTCT--GGAGCAGCCGTATATATAGC    149
                                      |..|||.||.|  |||||||             
BPUM_0009___x    119 CGATGATTGGGTGGGGTGTGTTGTTTGTAGGGAGCAG-------------    155

BSNT_00057___    150 TGGCATCTGGAATG-----CAAGACGGTTATTTCTTAAA-AAGCATGAAT    193
                           .||||.||     |||     ||.||| ||||| ||.||.|.|.
BPUM_0009___x    156 ------ATGGACTGCTTTCCAA-----TTGTTT-TTAAAGAAACACGGAC    193

BSNT_00057___    194 TGACAGGAAGAGAGTATGCTTACATTAAGAAAAACTTAGAGGAAGCAAGG    243
                     ||.|..|.||.||.||||..||.||.||..|..|.|||.|.||||||.||
BPUM_0009___x    194 TGTCTCGTAGTGATTATGTATATATCAAACAGCATTTAAAAGAAGCAGGG    243

BSNT_00057___    244 CAGAAAATGGTCCGTCTTAGGAAAA-CCTTGTTTCAGGCT---AAAAGCA    289
                     ||.||..|.||.||| |||..|||| |.||.|||   |||   ||||.|.
BPUM_0009___x    244 CAAAAGCTTGTGCGT-TTAAAAAAAGCTTTATTT---GCTGTGAAAAACG    289

BSNT_00057___    290 TTCAAATGTTTAAGCAAAATGCAGAAATGCTAAGGATTGTGAGAAGGATT    339
                     |.||||.|.|.||.||.|||...|||.|..|..||.|||...||.|.||.
BPUM_0009___x    290 TACAAACGATCAAACATAATTATGAAGTTTTTCGGCTTGCACGACGAATC    339

BSNT_00057___    340 TATCTCCTCACCAAAAAAGAGCCAAAGCGGTTTTATCAGGCAGAACGATT    389
                     |||....|.||.||||||||||||||.||.||||||.|.|||.|.||.||
BPUM_0009___x    340 TATACAATAACAAAAAAAGAGCCAAATCGATTTTATGATGCACAGCGCTT    389

BSNT_00057___    390 TTTTTATCAAACTCTCGATTCGGTTGTTGAATTGACAGAGAAGTATG--C    437
                     ||.||.|.|||.|.|.|||||.||.||||||.|.||.|||||.||||  |
BPUM_0009___x    390 TTATTTTGAAAGTTTGGATTCCGTCGTTGAACTAACTGAGAAATATGCAC    439

BSNT_00057___    438 TTTTCTATCATCTCACCCAAAAAAAAGCAAAGAACTGTCGATGTCGTTAA    487
                     |.||.|||.|  |||.||.||....|||.|.||.|||...|||.|.||||
BPUM_0009___x    440 TGTTGTATAA--TCAGCCTAATCGTAGCCATGAGCTGGAAATGACATTAA    487

BSNT_00057___    488 GTGAGACACGCATCACTCTTACTGA-ATTGAC---------CAAGCGTTT    527
                     |..|.||.||          |.||| ||||||         .||||..||
BPUM_0009___x    488 GCCAAACCCG----------AGTGACATTGACAGAGCTGCAAAAGCAATT    527

BSNT_00057___    528 AGAGGAA-GATTT--AAC-----TCAGGCAATGGATGAT-GAA----TTT    564
                      ||.||| |||||  |||     |.||| ||..||| || |||    || 
BPUM_0009___x    528 -GACGAATGATTTGCAACAAGTGTTAGG-AAGAGAT-ATAGAAGCTCTT-    573

BSNT_00057___    565 GACGAGTTGCAGTTTGAATTAGACGCAGCAAAACATTCAT--TAAAGAAA    612
                       |...||| ||.|||||.||   ||||..|||     ||  |.||||||
BPUM_0009___x    574 --CATATTG-AGCTTGAAGTA---GCAGATAAA-----ATGATGAAGAAA    612

BSNT_00057___    613 TAA    615
                     ||.
BPUM_0009___x    613 TAG    615


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