Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05917 and BL05373

See Amino acid alignment / Visit BSNT_05917 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05917___yxlE.1.5803.seq
#    -bsequence dna-align/BL05373___yxlE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05917___yxlE-BL05373___yxlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05917___yxlE-BL05373___yxlE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05917___yxlE
# 2: BL05373___yxlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 231
# Identity:     122/231 (52.8%)
# Similarity:   122/231 (52.8%)
# Gaps:          60/231 (26.0%)
# Score: 317.0
# 
#
#=======================================

BSNT_05917___      1 ATGA---------ATATTTCTTGGGAAATGATTTTGCCGCTGGTTG--TA     39
                     ||||         ||||..||||||            |||||.|.|  ..
BL05373___yxl      1 ATGACTGGAGCAGATATACCTTGGG------------CGCTGCTCGCCCC     38

BSNT_05917___     40 TTACA----GCTGGCTTTGGCGGTTTT-----TGCCCTCA----TCAGCT     76
                     ||.||    ||||.||||   ..||||     ||.||.||    ||||.|
BL05373___yxl     39 TTTCATTGTGCTGTCTTT---CATTTTAGCAGTGTCCGCATTGGTCAGTT     85

BSNT_05917___     77 GTATAAAAGAAGAGCGGACGAACGGGCCAAAGTGGATGTGGGCTGCAATC    126
                     |.||||||.|.|||...|||||.||.|||||||||||||||..|...|||
BL05373___yxl     86 GCATAAAACAGGAGAAAACGAATGGCCCAAAGTGGATGTGGATTTTGATC    135

BSNT_05917___    127 ATCGTATGTATCAATATTATCGGGCCGATTTTGTTTTTTACCGTCGGCAG    176
                     ||..|..|.||||.|.||.||||.||..|.|..|..||||.|.||||.|.
BL05373___yxl    136 ATTTTCGGGATCAGTTTTGTCGGTCCCGTCTCTTACTTTATCATCGGTAA    185

BSNT_05917___    177 AAAGCAAAGGTAA------------------    189
                     ||   |||..||.                  
BL05373___yxl    186 AA---AAACATATGAGAGGAGGCGGGTGTGA    213


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