Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05917 and BL05373
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05917___yxlE.1.5803.seq
# -bsequence dna-align/BL05373___yxlE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05917___yxlE-BL05373___yxlE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05917___yxlE-BL05373___yxlE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05917___yxlE
# 2: BL05373___yxlE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 231
# Identity: 122/231 (52.8%)
# Similarity: 122/231 (52.8%)
# Gaps: 60/231 (26.0%)
# Score: 317.0
#
#
#=======================================
BSNT_05917___ 1 ATGA---------ATATTTCTTGGGAAATGATTTTGCCGCTGGTTG--TA 39
|||| ||||..|||||| |||||.|.| ..
BL05373___yxl 1 ATGACTGGAGCAGATATACCTTGGG------------CGCTGCTCGCCCC 38
BSNT_05917___ 40 TTACA----GCTGGCTTTGGCGGTTTT-----TGCCCTCA----TCAGCT 76
||.|| ||||.|||| ..|||| ||.||.|| ||||.|
BL05373___yxl 39 TTTCATTGTGCTGTCTTT---CATTTTAGCAGTGTCCGCATTGGTCAGTT 85
BSNT_05917___ 77 GTATAAAAGAAGAGCGGACGAACGGGCCAAAGTGGATGTGGGCTGCAATC 126
|.||||||.|.|||...|||||.||.|||||||||||||||..|...|||
BL05373___yxl 86 GCATAAAACAGGAGAAAACGAATGGCCCAAAGTGGATGTGGATTTTGATC 135
BSNT_05917___ 127 ATCGTATGTATCAATATTATCGGGCCGATTTTGTTTTTTACCGTCGGCAG 176
||..|..|.||||.|.||.||||.||..|.|..|..||||.|.||||.|.
BL05373___yxl 136 ATTTTCGGGATCAGTTTTGTCGGTCCCGTCTCTTACTTTATCATCGGTAA 185
BSNT_05917___ 177 AAAGCAAAGGTAA------------------ 189
|| |||..||.
BL05373___yxl 186 AA---AAACATATGAGAGGAGGCGGGTGTGA 213
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