Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02810 and BL05349

See Amino acid alignment / Visit BSNT_02810 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02810.1.5803.seq
#    -bsequence dna-align/BL05349.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02810-BL05349.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02810-BL05349.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02810
# 2: BL05349
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 319
# Identity:     173/319 (54.2%)
# Similarity:   173/319 (54.2%)
# Gaps:          95/319 (29.8%)
# Score: 442.5
# 
#
#=======================================

BSNT_02810         1 ATGAAACTAAATCAATTTCTTGCATCAGATAAGGGCAAAGCTAAACGTAA     50
                     |||||.|||||.|.||||||               .||||||.|.|||.|
BL05349            1 ATGAACCTAAACCGATTTCT---------------AAAAGCTGACCGTGA     35

BSNT_02810        51 ATTGGCATCCGCA----CAGTTCCTATTAAACGAACTGCTTCCAGAT---     93
                     |..||    ||.|    |.||||.| ||.||||        |.||||   
BL05349           36 AAAGG----CGGAAAGGCTGTTCAT-TTCAACG--------CGAGATCTT     72

BSNT_02810        94 ------GAA------------ATAGAGAACAACA--ATTTTGATGAATGT    123
                           |||            ||.|||  .||||  |||||||.|.||||
BL05349           73 ATTTCGGAATTGCCTGCCGCGATCGAG--GAACATGATTTTGAAGGATGT    120

BSNT_02810       124 ATTGATCTTTGTTTATCGGCTGC----------TGAAATGTTCAAAGACA    163
                     .|.||..||         |||||          |.|||| |.|||.||..
BL05349          121 GTAGAAATT---------GCTGCAACAATCATTTTAAAT-TGCAAGGATC    160

BSNT_02810       164 TCAAACGGATGCATCATCCTGAACAAGTCGTTCAGCTACATGAAATTGCA    213
                     |.|||||||||.|.||.||.|||||.||.||||.|||.||.|||||.||.
BL05349          161 TTAAACGGATGGAGCACCCGGAACAGGTTGTTCGGCTTCACGAAATCGCG    210

BSNT_02810       214 ACTCAATTT-CTAAGTAAAGGTCTTGAT-----GTCTCAATTGTAAGGAG    257
                     .|..||||| |   |.|.|||   .|||     ||.||||.|||||||||
BL05349          211 TCCAAATTTGC---GAACAGG---GGATTAAACGTTTCAACTGTAAGGAG    254

BSNT_02810       258 GCCAGCATATGAATCTTGA    276
                        |.|.|.|.||   |||
BL05349          255 ---ATCGTTTCAA---TGA    267


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