Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04716 and BL05323
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:57
# Commandline: needle
# -asequence dna-align/BSNT_04716___pepA.1.5803.seq
# -bsequence dna-align/BL05323___pepA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04716___pepA-BL05323___pepA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04716___pepA-BL05323___pepA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04716___pepA
# 2: BL05323___pepA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1565
# Identity: 1109/1565 (70.9%)
# Similarity: 1109/1565 (70.9%)
# Gaps: 136/1565 ( 8.7%)
# Score: 3759.0
#
#
#=======================================
BSNT_04716___ 1 ATGTTTTATGCGGTTCAACAATCAGAGCATACAGAAACCCTTGTGGTCGG 50
|||||||||||..||.||.|.|..||..|.|.||||||.|||.|..||||
BL05323___pep 1 ATGTTTTATGCCTTTAAAGATTTCGAAAAAAAAGAAACGCTTTTAATCGG 50
BSNT_04716___ 51 GCTTTTTCAAAAAAGCCAGCTG-ACAGGAAAAGCGTTGGAAATTGATGAA 99
.||.|||.|||||||||.|||| || ||.||.|| |||.|||
BL05323___pep 51 ACTGTTTAAAAAAAGCCGGCTGTAC-GGTAAGGC---------TGAAGAA 90
BSNT_04716___ 100 AT-----GC---TCGAA-GGCCATCTGACACAGCTTTTAAAAGAGGGTGA 140
|| || |.||| |||||.||..|.|||||..|.|||||.||.||
BL05323___pep 91 ATCGACCGCCTTTTGAACGGCCAGCTTTCTCAGCTGCTGAAAGACGGGGA 140
BSNT_04716___ 141 TGTCTCTGC---GAAACCGAATCAAGTATCAAAAGTATT---CCCTCCAT 184
|||.|||.| .|||.||| ||||.||.|||.|||| ||||.| .
BL05323___pep 141 TGTATCTTCCAAAAAAGCGA---AAGTGTCTAAAATATTTACCCCTTC-G 186
BSNT_04716___ 185 CTTCTGCGGGTATGAAACGGATTTATTTCGTTGGTCTGGGGAGAGAAGC- 233
|||| .|||..|.|||||.||||||.||||.||..||||..|.|||||
BL05323___pep 187 CTTC--AGGGAGTCAAACGCATTTATATCGTCGGATTGGGCCGTGAAGCG 234
BSNT_04716___ 234 -AAATTATTCGTTTGAACAGGCGAAGGAATGTTTTGCCCATATTTTTCAA 282
||.||| |.||.||..|.||||||.|.||.||||||.|...|.||| |
BL05323___pep 235 GAATTTA--CCTTCGAGGATGCGAAGCAGTGCTTTGCCGAAGCTGTTC-A 281
BSNT_04716___ 283 GC-CATTCATAAAGATCGAAAACAAGAAACAGCTGTCCTACTTGATACGT 331
|| .|||||.|||||||||||.||.||...|.|.|||.|.||.||.|..|
BL05323___pep 282 GCTGATTCACAAAGATCGAAAGCAGGAGTTAACCGTCATGCTCGACAGCT 331
BSNT_04716___ 332 TTATTTCGGAAGACGTGCCTCCAGCCGATGCCGCTCATGCTTTAGCTGAG 381
|..|.||.|||||.||.||..|.||.||.|||||.|||||.||.|||||
BL05323___pep 332 TCGTATCCGAAGAAGTCCCAGCTGCTGACGCCGCACATGCATTGGCTGA- 380
BSNT_04716___ 382 AGC-TGCCTGCTTGCTTCCTATGAGGTGCAGGATTATAAGCACAAATCAA 430
|.| |||.||||..|.|.||||||.|||||||||||.|||||||.|||||
BL05323___pep 381 ATCGTGCATGCTGTCATGCTATGAAGTGCAGGATTACAAGCACAGATCAA 430
BSNT_04716___ 431 ATGAGCCTGA-CAAACAAATTG------AAGCCGTGTATGTTGTAACAGA 473
|||.|||||| ||| || ||| |||.||||||.|.|||||
BL05323___pep 431 ATGTGCCTGATCAA------TGTCTGCAAAG-CGTCTATGTTTTGACAGA 473
BSNT_04716___ 474 --------TGAAGATACACAGGAAGTGCAGGCGGGGCTTCGCGTCGGCCA 515
||| ||||..|.||||||.|.||.|..|||||.||
BL05323___pep 474 CCATGACCTGA--------AGGAGATTCAGGCGAGTCTGCATGTCGGACA 515
BSNT_04716___ 516 GGCATACGGACAAGGGACAAATTCGGCTAGAACGCTTGTGAATATGCCGG 565
||..||||||.|.|.|||.||||||||.|||||.||.|||||.|||||||
BL05323___pep 516 GGTGTACGGAAATGCGACGAATTCGGCGAGAACCCTCGTGAACATGCCGG 565
BSNT_04716___ 566 GAAACATGCTGACAGCGACTGACCTCGCTTCGTAT---GCTGAAGAGCTT 612
|.|||||||||||||||.|.||.|||||.||.||| |||||| ||
BL05323___pep 566 GGAACATGCTGACAGCGGCGGATCTCGCGTCATATGCCGCTGAA----TT 611
BSNT_04716___ 613 -GCGGCGAAATATGATTTTGAGTGTGAGATATTGGAGAAATCAGAGATGG 661
|||||||||||.||.|||||.|||||.||..|.||.||..|.||.||||
BL05323___pep 612 GGCGGCGAAATACGAATTTGAATGTGAAATTCTTGAAAAGGCTGAAATGG 661
BSNT_04716___ 662 AAGAGCTCGGTATGGGCGGAATACTTGCGGTAAACCAAGGCTCCACCGAA 711
||||||||||.||||||||..|.||.|||||.||||||||.||....||.
BL05323___pep 662 AAGAGCTCGGGATGGGCGGTCTCCTCGCGGTCAACCAAGGATCAGAAGAG 711
BSNT_04716___ 712 CCGCCGAAAATGATTGTGTTGAAATATCAGGGCAAAAAGGA--ATGGGAA 759
||||||||||||||.||.|||||||||||.|| |||||.| ||||||.
BL05323___pep 712 CCGCCGAAAATGATCGTCTTGAAATATCAAGG--AAAAGAAACATGGGAT 759
BSNT_04716___ 760 GACGTCGTCGGACTAGTCGGGAAAGGAATTACCTTTGACACAGGCGGCTA 809
||||||.||||..|||||||.|||||.|||||.|||||.||.||.|||||
BL05323___pep 760 GACGTCATCGGTTTAGTCGGCAAAGGGATTACGTTTGATACCGGAGGCTA 809
BSNT_04716___ 810 CTCCATTAAAACGAA-ATCTGGAATTGTCGGCATGAAATCAGATATGGGA 858
.||.|||||.||.|| |.| ||.||||||||||||||.||.||||||||.
BL05323___pep 810 TTCGATTAAGACAAAGAGC-GGGATTGTCGGCATGAAGTCCGATATGGGC 858
BSNT_04716___ 859 GGAGCAG-CTGCGGTTCTCGGGGCTATGGAAACGATCGGAGAGCTTCGTC 907
|||||.| |.|| |||.|.||.||.||||||.|||||||.||..|..|.|
BL05323___pep 859 GGAGCCGCCAGC-GTTTTGGGAGCGATGGAAGCGATCGGCGAATTGAGGC 907
BSNT_04716___ 908 CTGAGCAAAACGTGCTGTG-CGTTATTCCATCAACCGATAATATGATCTC 956
|.||.||||||||||| || |||.|||||.||.||.|||||.|||||.||
BL05323___pep 908 CGGAACAAAACGTGCT-TGCCGTGATTCCGTCGACTGATAACATGATTTC 956
BSNT_04716___ 957 CGGCGGGGCCATGAAGCCGGATGACGTGATCGTATCTTTAAGCGGAAAAA 1006
.||..|.||.|||||||||||.|||||.|||||.||.||.|||||.||.|
BL05323___pep 957 GGGAAGCGCAATGAAGCCGGACGACGTCATCGTTTCCTTGAGCGGCAAGA 1006
BSNT_04716___ 1007 CAATAGAAATCCTTAATACGGATGCTGAAGGAAGGCTAGTGCTTGCAGAT 1056
|.||.||.|||.|.||||||||.||.|||||||||||.|.|||.||.||.
BL05323___pep 1007 CGATTGAGATCTTGAATACGGACGCCGAAGGAAGGCTGGCGCTCGCTGAC 1056
BSNT_04716___ 1057 GGCATTACATACGCGAAACAGCATGGCGCATCAGTTCTTGTCGATGTAGC 1106
||..|.|||||.|||||.||.||.||.||.||.||.||..|||||||.||
BL05323___pep 1057 GGACTGACATATGCGAAGCACCACGGAGCTTCCGTGCTGATCGATGTCGC 1106
BSNT_04716___ 1107 TACGCTTACCGGCGGCGTCGTTGTGGCATTAGGAACAGAAACAACCGGTG 1156
.||.||.|||||.||||||||.||.||..|.|||||.|||||.||.||.|
BL05323___pep 1107 GACACTGACCGGAGGCGTCGTCGTAGCTCTGGGAACGGAAACGACGGGAG 1156
BSNT_04716___ 1157 CAATGACAA---ATGATCAAAGCTTTTACCAGCAGGT-----AGCTGATG 1198
|.||||||| |||||| .|| ||||.|||||||| || |..|
BL05323___pep 1157 CGATGACAAATCATGATC--CGC-TTTATCAGCAGGTGAGACAG--GCGG 1201
BSNT_04716___ 1199 CTGCACAAGAGTGCGGCGAGGCGATCTGGCAGCTGCCGATAACAGAGAAG 1248
|||.|.|||.| ||.||.|||||.||||||||.|||||.||.||.||.
BL05323___pep 1202 CTGAAGAAGCG---GGAGAAGCGATTTGGCAGCTTCCGATTACTGAAAAA 1248
BSNT_04716___ 1249 GATAAAAAACGCGTGAAAAGCAGCCAAATGGCGGATCTCAGCAATTCACC 1298
||.||||||.|.||.||||.||||||||||||.|||||.|.|||||||||
BL05323___pep 1249 GACAAAAAAAGAGTAAAAAACAGCCAAATGGCCGATCTTAACAATTCACC 1298
BSNT_04716___ 1299 GGGACGCGAGGGACATGCGATTATGGCAGGAACGTTTCTTGGTGAATTCG 1348
|||..|.||.||.||||||||||||||.||||||||.||.||.|||||||
BL05323___pep 1299 GGGCAGGGAAGGCCATGCGATTATGGCCGGAACGTTCCTCGGCGAATTCG 1348
BSNT_04716___ 1349 CTGAGTCA-ACACCTTGGGTTCACCTTGATATTGCAGGCA---CAGCGAC 1394
|.||| || ||.||.||||||||||||||.||.||.||.| ||.||||
BL05323___pep 1349 CCGAG-CAGACGCCATGGGTTCACCTTGACATCGCCGGAACGGCAACGAC 1397
BSNT_04716___ 1395 TGC-CAATAAAGCAACCTGCTTCGGACCGGCCGGGGCTACTGGCGTTATG 1443
.|| ||| ||..|| |||||.||||||...||.|..||.|||||.|||
BL05323___pep 1398 AGCTCAA-AACTCA---TGCTTTGGACCGAAAGGCGGAACGGGCGTGATG 1443
BSNT_04716___ 1444 GCAAGAACACTGGCTACACTTGCGGAGCGATTT-----ACATTGGAAGAA 1488
|..|||||.||.|..||..|||..|||||.||| |.|||.|.||
BL05323___pep 1444 GTGAGAACGCTTGTCACGTTTGTCGAGCGGTTTTCGGGAAATTTGTAG-- 1491
BSNT_04716___ 1489 GATAAAAACGAGTAA 1503
BL05323___pep 1491 --------------- 1491
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