Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04713 and BL05322
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:57
# Commandline: needle
# -asequence dna-align/BSNT_04713___yuiH.1.5803.seq
# -bsequence dna-align/BL05322___yuiH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04713___yuiH-BL05322___yuiH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04713___yuiH-BL05322___yuiH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04713___yuiH
# 2: BL05322___yuiH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 640
# Identity: 420/640 (65.6%)
# Similarity: 420/640 (65.6%)
# Gaps: 89/640 (13.9%)
# Score: 1389.0
#
#
#=======================================
BSNT_04713___ 1 ATGTATTTCGGAAAAACAAGAC------AGTCCGATCAATCTGGAAGAGT 44
.|||.|||.||.|||||||.|| ||||||| .||.||
BL05322___yui 1 GTGTTTTTTGGGAAAACAAAACCGCACAAGTCCGA---------CAGGGT 41
BSNT_04713___ 45 GCCGCCAAATCAAAACGTCACCACTTCATTTCCTGTGCTTCATACCGGAG 94
|||.|||||.|||||.|||||.||.||.||||||||.||||||.|.|||.
BL05322___yui 42 GCCTCCAAACCAAAATGTCACAACATCTTTTCCTGTTCTTCATGCAGGAC 91
BSNT_04713___ 95 ATGTCCCATATTACGAAGATATGACGAAATGGAATCTTCAAGTGTACGGT 144
||||.||..|.||||||||..||.|.|||||||||.|.|||.|.|||||.
BL05322___yui 92 ATGTTCCGGAATACGAAGACCTGTCAAAATGGAATTTGCAAATTTACGGA 141
BSNT_04713___ 145 TTGGTTGACCATCCGATGCTGCTAAGCTTTGAAGATGTCAAAGCCTTTCC 194
.|.||.||.||.|||.|.|||||.|..||.||.||| ||| |
BL05322___yui 142 CTTGTCGAACAGCCGCTCCTGCTGACGTTGGATGAT--------CTT--C 181
BSNT_04713___ 195 ACGGTATG-----AATCGAA-----AAATGACATTCATTGTGTCACGGGA 234
|.|..||| ||.|||| .|||||||||||||||||.||.||.
BL05322___yui 182 ATGAGATGCCGCAAAGCGAAGTGTCCAATGACATTCATTGTGTAACAGGC 231
BSNT_04713___ 235 TGGTCAAGGCTTGATAATGTGTGGCAAGGCGTGCGGGCTTGTGAT----- 279
|||||.|.|||.||||||||.|||.|||| |||
BL05322___yui 232 TGGTCCAAGCTCGATAATGTTTGGGAAGG-------------GATCAAGA 268
BSNT_04713___ 280 --------ATAGCGGAAAAAGCGGGTGTAAA--------AGAAGAAGCTG 313
||.||.|||| |.||||| .| |||||..
BL05322___yui 269 CAAAGGAGATCGCTGAAA------GAGTAAAGCCGCTTCCG--GAAGCCA 310
BSNT_04713___ 314 GCTACGTCATTTTACATGCTGAAGAGGGCTGGACGACCAATCTGCCGCTT 363
|.|..|||||.||.|||||.||.||.|||||||||||.|||.|.|||||.
BL05322___yui 311 GATTTGTCATCTTGCATGCAGAGGAAGGCTGGACGACGAATGTTCCGCTC 360
BSNT_04713___ 364 GATGATTTCTTAGCGGAAACTTCCCTTCTGGCTTATGCGCATAATGGCGA 413
||.||.||.||...|||..|.||.|||.|||||.||.|.|||||.||||.
BL05322___yui 361 GAAGACTTTTTGAAGGATTCGTCTCTTTTGGCTCATTCCCATAACGGCGC 410
BSNT_04713___ 414 ACCTTTAACCCCTGAACACGGCTTTCCGCT----GCGGGGTGTGTTTCCG 459
.||..|.||.||.||.|||||||||||||| ||| |||.|.|||
BL05322___yui 411 CCCGCTCACGCCGGAGCACGGCTTTCCGCTCAGAGCG----GTGATGCCG 456
BSNT_04713___ 460 CATCTATATTTTTGGAAAAGCGCCAAGTGGCTGCGCGGCATCCAATTTAC 509
|||.|.||||||||||||||||||||.||||||.|.|||||.||.|||||
BL05322___yui 457 CATTTGTATTTTTGGAAAAGCGCCAAATGGCTGAGGGGCATTCAGTTTAC 506
BSNT_04713___ 510 GAAAGAAAATCACCCTGGCTTTTGGGAGCGGAATGGCTATCACATGAGAG 559
.||.|||||.||.||.||||||||||||...||.|||||.||..|.||.|
BL05322___yui 507 AAAGGAAAACCATCCGGGCTTTTGGGAGAAAAACGGCTACCATCTTAGGG 556
BSNT_04713___ 560 GCGACCCTTGGCAAAATCAAAGGTTTACA--TGGGATTAA 597
|..|.||.|||.||.|..|||| .|||| |..|||||.
BL05322___yui 557 GAAATCCGTGGAAAGAAGAAAG--ATACAGCTTTGATTAG 594
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