Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04463 and BL05305
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04463___ytkA.1.5803.seq
# -bsequence dna-align/BL05305___ytkA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04463___ytkA-BL05305___ytkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04463___ytkA-BL05305___ytkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04463___ytkA
# 2: BL05305___ytkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 503
# Identity: 289/503 (57.5%)
# Similarity: 289/503 (57.5%)
# Gaps: 124/503 (24.7%)
# Score: 713.0
#
#
#=======================================
BSNT_04463___ 1 -------ATGAAAAAGATGTTGGTTGTTCTGCTTTTTTCTGCTTTTTTGC 43
.||.|||| ||||| |.|| ||.||.||.
BL05305___ytk 1 ATGCGTTTTGGAAAA-----TGGTT------CATT------CTCTTATGT 33
BSNT_04463___ 44 TTAATGGATGCG---GATCT----------------GGTGA-AAGCA--A 71
||| ||| |.||| ||.|| ||||| .
BL05305___ytk 34 TTA------GCGGTCGGTCTTTCCGCCTGCAGCCAGGGGGACAAGCAGGC 77
BSNT_04463___ 72 AGCAAATACAGCTGAGACGCCCGAGGTTTTGGATGTCAA-----GCTGAC 116
.||| .|.|.||||..||||.|.||..| ||.|.||| || |||
BL05305___ytk 78 GGCA---TCGGATGAGGAGCCCAAAGTGCT-GACGGCAAAACTGGC-GAC 122
BSNT_04463___ 117 CGGGCCTGAA---------AAAGTAAATCCCGGAGAAAGCGCTGCTTAT- 156
||||||| || |||| ||||..|||| |.||
BL05305___ytk 123 ---GCCTGAATCGGCGGCCAA---AAAT------GAAAAGGCTG-TCATA 159
BSNT_04463___ 157 GAAGCAGCCGT-ATCATATGGTGATGAAGCTGTGACGGATGCCGATGAAG 205
.||||..|||| .|| ||.||.||.||..|.||..|.|||||||||||.|
BL05305___ytk 160 AAAGCGACCGTCCTC-TACGGGGAAGAGCCGGTTGCAGATGCCGATGAGG 208
BSNT_04463___ 206 TAGAGTTTGAAGTATGGAAAGAAGGG-GAAA--AAGA-CGCAAGCCAAAT 251
|.|||||||||...|||||.|..||| |.|| |||| .||.|||.||
BL05305___ytk 209 TGGAGTTTGAATGCTGGAAGGCCGGGAGCAAGGAAGATAGCGAGCTAA-- 256
BSNT_04463___ 252 GTTTAAGGCGAAACAAGA---AAAAGGCGTATACCGATTGGAAACGACGT 298
|.||.|||||..|.|| |||||||||||||.|..||||||...|||
BL05305___ytk 257 --TCAAAGCGAAGAATGAGGGAAAAGGCGTATACAGCATGGAAAAAGCGT 304
BSNT_04463___ 299 TTAAGGAAGATGGTGTATACACTGTCCAA-TCTCATGTCACAGCAAAAAA 347
||...|||||.||....||||..|||||| || ||||||||.||.|||||
BL05305___ytk 305 TTCCTGAAGACGGCCATTACAAAGTCCAAGTC-CATGTCACGGCGAAAAA 353
BSNT_04463___ 348 ACAGCATAGCATGCC-------GACCTTAAA--AGTCCAA--GTCGGA-G 385
||||||||..||||| |||.||||| ||...|| |.|||| |
BL05305___ytk 354 ACAGCATACAATGCCTGTTGCAGACATTAAAGTAGGGAAAGCGACGGATG 403
BSNT_04463___ 386 ACGCCGATGCTGCCAGCAATCAGTCAGAAGAGGAGCATTCACATCATCAT 435
|..||||||..| ||.|...||||||.| |.||.||||||
BL05305___ytk 404 AGACCGATGAAG------ATGAAAAAGAAGAAG------CCCACCATCAT 441
BSNT_04463___ 436 TGA 438
|||
BL05305___ytk 442 TGA 444
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