Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04213 and BL05300

See Amino acid alignment / Visit BSNT_04213 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_04213___rpmI.1.5803.seq
#    -bsequence dna-align/BL05300___rpmI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04213___rpmI-BL05300___rpmI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04213___rpmI-BL05300___rpmI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04213___rpmI
# 2: BL05300___rpmI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 201
# Identity:     174/201 (86.6%)
# Similarity:   174/201 (86.6%)
# Gaps:           0/201 ( 0.0%)
# Score: 762.0
# 
#
#=======================================

BSNT_04213___      1 ATGCCAAAAATGAAAACTCACCGCGGATCTGCTAAACGTTTTAAAAAGAC     50
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BL05300___rpm      1 ATGCCAAAAATGAAAACTCACCGCGGATCTGCGAAACGTTTTAAAAAGAC     50

BSNT_04213___     51 AGGTTCTGGGAAGTTAAAACGTTCTCACGCGTACACAAGTCACTTATTCG    100
                     ||||||.|||||..|.|||||||||||.||.||.|||||||||||.||||
BL05300___rpm     51 AGGTTCCGGGAAACTGAAACGTTCTCATGCATATACAAGTCACTTGTTCG    100

BSNT_04213___    101 CCAACAAATCTCAAAAGCAAAAGCGTAAGCTTCGCAAGAGTGCTGTTGTA    150
                     |.||.|||||||||||.||||||||.|||||||||||.||.||.||.|||
BL05300___rpm    101 CAAATAAATCTCAAAAACAAAAGCGCAAGCTTCGCAAAAGCGCAGTCGTA    150

BSNT_04213___    151 AGCGCAGGAGACTTCAAACGTATCAAACAAATGCTTGCTAACATCAAGTA    200
                     |||||.||.||.||||||||.|||||.||...||||||.|||||.|||||
BL05300___rpm    151 AGCGCCGGCGATTTCAAACGCATCAAGCAGCAGCTTGCCAACATTAAGTA    200

BSNT_04213___    201 A    201
                     |
BL05300___rpm    201 A    201


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