Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04136 and BL05298
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_04136___ysnB.1.5803.seq
# -bsequence dna-align/BL05298___ysnB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04136___ysnB-BL05298___ysnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04136___ysnB-BL05298___ysnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04136___ysnB
# 2: BL05298___ysnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity: 376/555 (67.7%)
# Similarity: 376/555 (67.7%)
# Gaps: 78/555 (14.1%)
# Score: 1209.0
#
#
#=======================================
BSNT_04136___ 1 ATGAACGTGCTGATTATCAGTGACAGCCATGGGCTTGAAGAAGAACTCCA 50
|||||.||.||||||.||||.||||||||.||.||||||||.|||||..|
BL05298___ysn 1 ATGAAGGTTCTGATTGTCAGCGACAGCCACGGCCTTGAAGACGAACTGGA 50
BSNT_04136___ 51 AACCATTGCGAAACGGCATGAGGCA-GAAGTTGATCTCATGATTCATTGC 99
||..||.||..|.|||||.| ||.| |||...||||||||.||.||||||
BL05298___ysn 51 AATGATCGCTGAGCGGCACG-GGAAGGAAACAGATCTCATCATCCATTGC 99
BSNT_04136___ 100 GGGGACTCTGAGCTTGAAACGAGGCATCCTGCATTGGAGCCTT---AT-- 144
|||||.||||| ||||||.|||| ||
BL05298___ysn 100 GGGGATTCTGA---------------------ATTGGACCCTTCCCATCC 128
BSNT_04136___ 145 -GCGGTT---------------GTAAAAGGCAATTGCGATTTTGCCGGCG 178
|||.|| ||||||||.||.|||||||||..|||.|
BL05298___ysn 129 CGCGCTTTCCTCTTACTTAACGGTAAAAGGAAACTGCGATTTTTACGGGG 178
BSNT_04136___ 179 ATTTTAAGGACG--AGCTTC-TTCTGACTGCCGGCTCAAGAAAAATACTG 225
|.||.||.|||| |.|.|| ||| |.|||||.||.|||||..|..|.
BL05298___ysn 179 AGTTCAAAGACGAAATCGTCGTTC---CCGCCGGATCGAGAAAGCTTTTT 225
BSNT_04136___ 226 GTCACACACGGCCACCTTCACGGTATAAAACAGAC-CTTGTTAAACGTAT 274
.||||||||||.||..|..||||.||.||||||.| ||| |||||.||.|
BL05298___ysn 226 TTCACACACGGGCATTTATACGGCATTAAACAGTCGCTT-TTAAATGTGT 274
BSNT_04136___ 275 ACTATCGTGCAGAGGAGCTCGGAGCGGATGTTATCTGCTTCGGGCATTCG 324
||||.||.||.||.||||||||.||.|||.|.|||||.|||||.|||||.
BL05298___ysn 275 ACTACCGGGCTGAAGAGCTCGGCGCCGATATCATCTGTTTCGGCCATTCC 324
BSNT_04136___ 325 CACATCGCGGGCAGCGAAGTGCTGCGCGGAAAACTGATGATTAACCCAGG 374
|||||||||||.|||||..||.||..||||||||||.||||.|||||.||
BL05298___ysn 325 CACATCGCGGGAAGCGAGCTGATGGACGGAAAACTGCTGATCAACCCCGG 374
BSNT_04136___ 375 CAGCATCCGGCTTCCGAGGGTGCGCAGGACAG---AAAGCTATGCTATAC 421
|||||||||.||||||.|||||| |||.|| |||..||||||||||
BL05298___ysn 375 CAGCATCCGCCTTCCGCGGGTGC---GGAAAGAAAAAACTTATGCTATAC 421
BSNT_04136___ 422 T-GACATTAGAAAATGATGCTGCGACAGTCCGTTTTTACGAC-----CAA 465
| .||||| ||.||.||...|||.||.||.||.|.|||.||| | .
BL05298___ysn 422 TAAACATT-GACAAAGACAATGCAACGGTTCGCTATTATGACTTGGAC-G 469
BSNT_04136___ 466 GCAGGCAA--TGAAA--TTGAGGATC--TGCAAAA---CCGAGTCACACT 506
||.||.|| .|||| .|||.||.| ||.|.|| || || ||||.|
BL05298___ysn 470 GCCGGGAAGTCGAAAGCCTGACGAACCATGTACAATTGCC-AG-CACATT 517
BSNT_04136___ 507 -ATGA 510
||||
BL05298___ysn 518 CATGA 522
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