Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04061 and BL05293

See Amino acid alignment / Visit BSNT_04061 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:07
# Commandline: needle
#    -asequence dna-align/BSNT_04061___spoIVFB.1.5803.seq
#    -bsequence dna-align/BL05293___spoIVFB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04061___spoIVFB-BL05293___spoIVFB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04061___spoIVFB-BL05293___spoIVFB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04061___spoIVFB
# 2: BL05293___spoIVFB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 906
# Identity:     595/906 (65.7%)
# Similarity:   595/906 (65.7%)
# Gaps:          78/906 ( 8.6%)
# Score: 1814.0
# 
#
#=======================================

BSNT_04061___      1 TTGAATAAATGGCTCGACCTTATCTTAAAGATCCATGTGCATCCTTTTCT     50
                     ||||.|||||||...||.||..||...|||.|.||..|.|||||..|.||
BL05293___spo      1 TTGAGTAAATGGACGGAGCTCTTCACCAAGCTTCACATTCATCCGCTGCT     50

BSNT_04061___     51 TTGGATTATCGCGGCGCTGGGCTTGCTCACAGGCCATATGAAAGCATTAT    100
                     .|||.||.||..||||.|.||..|..|.|||||.|||||.|||||..|.|
BL05293___spo     51 GTGGCTTGTCATGGCGATCGGTATCATGACAGGACATATTAAAGCGCTGT    100

BSNT_04061___    101 TTTGTCTGCTCCTGATTGTATTGATTCATGAGCTGGGGCATGCTGCT-CT    149
                     |||||.|..|..|.|||.|.|||||.||.|||||.||.||.|||||| ||
BL05293___spo    101 TTTGTTTAATGATCATTATTTTGATCCACGAGCTTGGCCACGCTGCTGCT    150

BSNT_04061___    150 GGCTGTGTTTTTTTCTTGGAGAATCAAGCGTGTTTTTTTGCTGCCGTTTG    199
                      ||.||.|.||||||.||||||||.||..|..||||..|||||||.||||
BL05293___spo    151 -GCCGTTTATTTTTCATGGAGAATTAAAGGCATTTTCCTGCTGCCTTTTG    199

BSNT_04061___    200 GGGGAACGGTCGAAGTGGAAGAGCACGGGAATCGGCCGTTAAAGGAAGAG    249
                     |.||||||.|.|||||.||.||.|||||.||..|.|||||||||||||||
BL05293___spo    200 GAGGAACGCTGGAAGTCGATGAACACGGCAACAGACCGTTAAAGGAAGAG    249

BSNT_04061___    250 TTTGCGGTCATTATTGCCGGCCCTCTTCAGCACATCTGGCTTCAGTTTGC    299
                     .||||.|||||....||.||.|||.||||||||||.||||||||.|||||
BL05293___spo    250 CTTGCCGTCATCGCCGCGGGGCCTGTTCAGCACATTTGGCTTCAATTTGC    299

BSNT_04061___    300 CGCCTGGATGCTTGCAG--AAGTCTCAGTGATTCATCAG----CATACCT    343
                     .||||||.|..|.||.|  ||.||.|      |||||||    ||||..|
BL05293___spo    300 AGCCTGGCTTTTGGCGGTCAATTCGC------TCATCAGCCCTCATATAT    343

BSNT_04061___    344 TTGAACTCTTCACCTTTTATAATCTTTCTATCTTATTTGTCAATTTACTG    393
                     |||||...||.||.|||||.|||||..|.|||.|.||..|.|||.|..|.
BL05293___spo    344 TTGAAACGTTTACTTTTTACAATCTGACCATCCTCTTGATAAATCTGTTT    393

BSNT_04061___    394 CCGATCTGGCCGCTGGATGGAGGAAAACTGTTATTTTTGTTGTTTTCCAA    443
                     ||.||.||||||||.||.||.||.||.|||.|.|||.||.|||||||.||
BL05293___spo    394 CCTATTTGGCCGCTTGACGGCGGGAAGCTGCTGTTTCTGCTGTTTTCAAA    443

BSNT_04061___    444 ACAGCTGCCTTTTCAAAAGGCTCACCGGCTTAATCTAAAAACG------T    487
                     |||.||.||.|.|||.||.||.||.|||.|.|..||      |      |
BL05293___spo    444 ACACCTTCCGTATCAGAAAGCGCAGCGGATGATGCT------GGCTGTAT    487

BSNT_04061___    488 CGCTCTGCTTCTGC----CTGTTGCT-----CGG-----GTGCTGGGTTT    523
                     ||   |||||.|||    ||||| ||     |||     .||||||    
BL05293___spo    488 CG---TGCTTTTGCTGCGCTGTT-CTAATCGCGGCGACTCTGCTGG----    529

BSNT_04061___    524 TATTCGTGATTCC---TCTGCAGATCAGCGCATGGGTTTTGTTTGTCTTT    570
                        ||     |||   || ||||.|.|||||.|||||..|..|.||.|||
BL05293___spo    530 ---TC-----TCCCCGTC-GCAGCTGAGCGCTTGGGTGCTTCTCGTATTT    570

BSNT_04061___    571 CTGGCTGTTTCCTTGTTTGAGGAATATCGGCAA-AGGCACTATATCCATG    619
                     .||||||..|||.|.|...||||||||| |||| .||||.||...||||.
BL05293___spo    571 TTGGCTGCATCCCTTTACCAGGAATATC-GCAATCGGCATTACGCCCATA    619

BSNT_04061___    620 TGAGATTTCTCCTCGAAAGGTATTACGGAAAAAACAGGGAGCTTGAGAAA    669
                     |..|.|||.|.||.||..|.||.||.|||||..|.|||||..|...|..|
BL05293___spo    620 TCCGTTTTTTGCTTGAGCGCTACTATGGAAATGAGAGGGAAGTGCGGCGA    669

BSNT_04061___    670 CTTCTGCCGCTGACAGT--------AAAGGCGGAGGATAAAGTCTATCAT    711
                     ||....|||.|.||.||        ||..||.||        |.|||.|.
BL05293___spo    670 CTCGCACCGATCACGGTGTGCGCCGAACAGCAGA--------TTTATGAG    711

BSNT_04061___    712 GTGATGGCCGAGTTCAAACGTGGCTGTAAGCATCCGATTATTATAGAAAA    761
                     ||.|||..|..|||.|||.|.|||||.||.||.|||||.|||||.||.||
BL05293___spo    712 GTCATGCTCATGTTTAAAAGGGGCTGCAAACACCCGATCATTATTGAGAA    761

BSNT_04061___    762 ATCAGGCCAAAAGCTCAGCCAGCTTGACGAGAATGAAGTGCTGCACGCTT    811
                     ....||.|||||.||.||||||||.||.||.||||||||.||.|||||||
BL05293___spo    762 GGACGGACAAAAACTGAGCCAGCTGGATGAAAATGAAGTTCTCCACGCTT    811

BSNT_04061___    812 ACTTTGCCGATAAGCGGACGAATTCTTCCATGGAGGAGCTGCTTCTGCCC    861
                     |.|||.|.||.|||||.||||.|||.||.|||||.||.|||||||||...
BL05293___spo    812 ATTTTACAGACAAGCGCACGACTTCCTCAATGGAAGATCTGCTTCTGGTT    861

BSNT_04061___    862 TACTAA    867
                     ||.|.|
BL05293___spo    862 TATTGA    867


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04061 and BL05293

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
