Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04059 and BL05292

See Amino acid alignment / Visit BSNT_04059 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:06
# Commandline: needle
#    -asequence dna-align/BSNT_04059___ysxB.1.5803.seq
#    -bsequence dna-align/BL05292___ysxB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04059___ysxB-BL05292___ysxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04059___ysxB-BL05292___ysxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04059___ysxB
# 2: BL05292___ysxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     246/344 (71.5%)
# Similarity:   246/344 (71.5%)
# Gaps:           7/344 ( 2.0%)
# Score: 843.5
# 
#
#=======================================

BSNT_04059___      1 ATGATTCAGGCAACAATCAGAAGGTCTCATGAT-----AAAGGCATATTG     45
                     ||||||||.||||..||.|.|||.||.|  |||     ||||.|||.|||
BL05292___ysx      1 ATGATTCATGCAAAGATTACAAGATCCC--GATCGAACAAAGACATCTTG     48

BSNT_04059___     46 TCTTTTGAAATGACGGGCCATGCGAATTTTGCTGAACATGGACAAGATCT     95
                     ...|||||||||.||||.|||||||||||||||||||||||.||.|||||
BL05292___ysx     49 GGCTTTGAAATGTCGGGACATGCGAATTTTGCTGAACATGGTCAGGATCT     98

BSNT_04059___     96 TGTTTGTGCCGGAGTGACAGCCGTTGTGTTTGGAGCCGTTAACGCGGTCA    145
                     .|||||.||.||.|.|.|.||.||.|..|||||||||||.||.||.||.|
BL05292___ysx     99 CGTTTGCGCAGGGGCGTCGGCGGTCGCCTTTGGAGCCGTCAATGCCGTAA    148

BSNT_04059___    146 TTGTGCTCGCGGGCTTCGAGCCGCTTCTTGATATAGGGGAGGACGGGGGG    195
                     |...|||..|||||.|.||||||.|..||||..|.|||||.|||||||||
BL05292___ysx    149 TGAAGCTGACGGGCATTGAGCCGGTCATTGACCTCGGGGAAGACGGGGGG    198

BSNT_04059___    196 TATTTTTATTTTGAATTCCCTGAATCTCTTGATCCAGAGGCACGCCAAAA    245
                     |.|||.|.|||....|||||.||...|...||||..|||||.....||||
BL05292___ysx    199 TTTTTATCTTTCCGCTTCCCGGACGGTACGGATCGTGAGGCTTTTGAAAA    248

BSNT_04059___    246 AGCTCAGCTGCTGATTGAAGGCATGATTGTTTCGCTGGAGACAATCGAAC    295
                     .||.|||||.||..|.|||||||||||.||.||.||.||.||.|||||||
BL05292___ysx    249 GGCGCAGCTCCTTCTCGAAGGCATGATCGTCTCCCTTGACACGATCGAAC    298

BSNT_04059___    296 GGGATTACAAAGACAACTTGCGTGTGACCACAAACATAATATAG    339
                     |.||.|||||||...||||....||.||.||.||||.|||||||
BL05292___ysx    299 GAGACTACAAAGGTTACTTAAAAGTAACGACGAACAAAATATAG    342


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.