Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03997 and BL05287

See Amino acid alignment / Visit BSNT_03997 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_03997___yrvM.1.5803.seq
#    -bsequence dna-align/BL05287___yrvM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03997___yrvM-BL05287___yrvM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03997___yrvM-BL05287___yrvM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03997___yrvM
# 2: BL05287___yrvM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity:     603/768 (78.5%)
# Similarity:   603/768 (78.5%)
# Gaps:           6/768 ( 0.8%)
# Score: 2338.0
# 
#
#=======================================

BSNT_03997___      1 TTGTTACACCAGTTTTCACGCAATGAATTAGCTATCGGAAAAGAAGGCCT     50
                     ||||||||.||||||||||||||.||||||||.||.|||||||||||  |
BL05287___yrv      1 TTGTTACATCAGTTTTCACGCAACGAATTAGCGATTGGAAAAGAAGG--T     48

BSNT_03997___     51 TGAA--ACGCTGAAAAACAGCACAGTTGCTGTGCTTGGAGTCGGAGGAGT     98
                     |.||  |...|.|||||||||||.||.||.||..|.||.|||||.||.||
BL05287___yrv     49 TTAAATATTTTAAAAAACAGCACGGTCGCCGTTTTGGGCGTCGGCGGGGT     98

BSNT_03997___     99 TGGGTCGTTCGCGGCGGAAGCGCTCGCGCGGTCAGGCGTCGGCCGCATTC    148
                     .||.||.|||||.||||||||||||||.||.|||||.||||||.|.||..
BL05287___yrv     99 CGGTTCTTTCGCCGCGGAAGCGCTCGCCCGTTCAGGTGTCGGCAGAATCG    148

BSNT_03997___    149 TGCTTGTCGACAAAGATGATGTCGACATTACAAATGTAAACCGTCAGCTT    198
                     ||.|.|||||.|||||.|||||.|||||.||.|||||.|||||||||||.
BL05287___yrv    149 TGATGGTCGATAAAGACGATGTTGACATCACGAATGTCAACCGTCAGCTG    198

BSNT_03997___    199 CACGCGCTGCTTTCAACTGTCGGACAGCCGAAAGTTGATTTAATGAAGGC    248
                     |..||..|.||||||||.||||||||||||||||||||.||||||||.||
BL05287___yrv    199 CCTGCTTTACTTTCAACGGTCGGACAGCCGAAAGTTGACTTAATGAAAGC    248

BSNT_03997___    249 GCGGATCGCAGACATTAACCCGGAGTGTGAAGTAATCTCGTTAAAAATGT    298
                     |.|.|||||.||.|||||.|||||.||.||.||.|||.|.||||||||||
BL05287___yrv    249 GAGAATCGCCGATATTAATCCGGAATGCGACGTCATCGCTTTAAAAATGT    298

BSNT_03997___    299 TCTATACGGAGGAAACGTATGAGCAGTTTTTTGACTATGATCTTGACTAT    348
                     |||||||.||.||.||||||||.||||||||||..|||||.|..||.|||
BL05287___yrv    299 TCTATACCGAAGAGACGTATGAACAGTTTTTTGCATATGAACCGGATTAT    348

BSNT_03997___    349 GTCATTGATGCGTCAGACACCATTTGTTATAAAATTCATTTAATGAAAGA    398
                     ||.||.||.||.||||||||.|||..|||||||||.||.|||||||||||
BL05287___yrv    349 GTAATCGACGCTTCAGACACGATTCATTATAAAATCCACTTAATGAAAGA    398

BSNT_03997___    399 ATGTCTAAAACGGGATATTCCGC-TCATCTCCAGCATGGGTGCTGCAAAT    447
                     .||.||.||.||.|..| ||..| |||||||.||||||||.||.||.|||
BL05287___yrv    399 GTGCCTGAAGCGCGGCA-TCAACATCATCTCAAGCATGGGAGCGGCCAAT    447

BSNT_03997___    448 AAAACGGATCCGACACGCTTCCAAATCGCTGATATCTCAAAAACGCACAC    497
                     |||||.|||||||||.|.||.|||.|.||.|||||.||||||||.|||||
BL05287___yrv    448 AAAACAGATCCGACAAGGTTTCAAGTGGCCGATATTTCAAAAACCCACAC    497

BSNT_03997___    498 TGATCCAATTGCGAAGGTCGTCCGTACGAAATTACGCAAAGAGGGGATCA    547
                     .|||||.|||||.||.|||.||||.||||...|.|||||.||.||.||.|
BL05287___yrv    498 CGATCCGATTGCAAAAGTCATCCGGACGAGGCTTCGCAAGGAAGGCATTA    547

BSNT_03997___    548 AAAAAGGCGTCCAAGTGATTTTCTCTGATGAAAGCCCGATTGTCATTCGG    597
                     ..||||||.|..||||..|.||.|||||.|||||.|||||.||.||.||.
BL05287___yrv    548 CGAAAGGCATTAAAGTCGTCTTTTCTGACGAAAGTCCGATCGTGATCCGT    597

BSNT_03997___    598 GAAGATGTCAGAAAAGAAGTGGGAAATGACGAAGCGAAAATCCGTAAAGC    647
                     |||||.||..|..|||..||.||||||||.||||||||||||||.|||||
BL05287___yrv    598 GAAGACGTACGCCAAGTCGTCGGAAATGATGAAGCGAAAATCCGCAAAGC    647

BSNT_03997___    648 AAAAATGCCGCCTTCCTCTAATGCTTTTGTGCCGTCAGTTGCAGGTTTGA    697
                     ..|.||||||||.||.||.|||||||||||.||||||||.|||||.||||
BL05287___yrv    648 GCAGATGCCGCCGTCTTCAAATGCTTTTGTTCCGTCAGTCGCAGGCTTGA    697

BSNT_03997___    698 TTATGGGCGGACATGTTGTCATGGATCTTTTGAAAGACATAGAAATCAAA    747
                     ||||||||||.|||||..|||||||.|||||||||||.||....||||||
BL05287___yrv    698 TTATGGGCGGCCATGTGATCATGGAGCTTTTGAAAGATATTCCGATCAAA    747

BSNT_03997___    748 CGTGTGAAGGATAAATAA    765
                     .|.|||||.|||||.|||
BL05287___yrv    748 AGGGTGAAAGATAAGTAA    765


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