Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03996 and BL05286
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:02
# Commandline: needle
# -asequence dna-align/BSNT_03996___rarA.1.5803.seq
# -bsequence dna-align/BL05286___yrvN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03996___rarA-BL05286___yrvN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03996___rarA-BL05286___yrvN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03996___rarA
# 2: BL05286___yrvN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity: 966/1297 (74.5%)
# Similarity: 966/1297 (74.5%)
# Gaps: 62/1297 ( 4.8%)
# Score: 3533.0
#
#
#=======================================
BSNT_03996___ 1 ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTAT 50
|||||.|||.|.||||.|||.|||||.||.||||||||.||.||..||.|
BL05286___yrv 1 ATGAAACCACTCGCATTTCGAATGCGCCCTACAAAAATCGAAGAGGTTCT 50
BSNT_03996___ 51 CGGCCAGCAGCATCTGGTGGCTGAAGATAAAATTATTGGCA--GAATGGT 98
|||||||.|.||.|||||.|..||||..||.||.||| || |.|||||
BL05286___yrv 51 CGGCCAGGATCACCTGGTCGGGGAAGGAAAGATCATT--CATCGGATGGT 98
BSNT_03996___ 99 CCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTG 148
.|||||.|||||..|.|||||.||||||.|||||||.||.||.||.||.|
BL05286___yrv 99 GCAGGCCAAACACCTTTCATCGATGATTCTGTACGGCCCCCCGGGCATCG 148
BSNT_03996___ 149 GAAAAACATCAATCGCAACAGCAATCGCCGGTTCA--ACAAGTATTGCTT 196
|.|||||.||.|||||.||.||.||.||||| || ||.||.||.||||
BL05286___yrv 149 GCAAAACGTCGATCGCCACGGCGATTGCCGG--CAGCACGAGCATCGCTT 196
BSNT_03996___ 197 TTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAAATCGTA 246
|.|||||||||||.||.|||||.||.||||||||.|||||||||..|.|.
BL05286___yrv 197 TCCGAAAGCTGAACGCAGTCATCAATAATAAAAAGGATATGGAAGCCATT 246
BSNT_03996___ 247 GCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGT 296
||....|||||.||.|||||.||.||.||.||.||.||.||.|||||.||
BL05286___yrv 247 GCCGCCGAAGCAAAAATGTCGGGGCAGGTTATCTTAATCCTTGATGAGGT 296
BSNT_03996___ 297 CCACAGGCTGGATAAAGGAAAACAGGATTTTCTATTACCCTATTTAGAAA 346
.|||.||||.||.|||||.||.|||||.|||||..|.||.|||||.||||
BL05286___yrv 297 GCACCGGCTTGACAAAGGCAAGCAGGACTTTCTCCTTCCGTATTTGGAAA 346
BSNT_03996___ 347 ACGGGATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCC 396
||||.|||||.||..|||||||.||.|||||.||.||||||||.|||||.
BL05286___yrv 347 ACGGCATGATTATCATGATCGGGGCGACGACAGCCAACCCGTACCATGCG 396
BSNT_03996___ 397 ATTAATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTT 446
||.||||||||||||||||||.|.||.||||||||.|||||..|.|||||
BL05286___yrv 397 ATCAATCCGGCGATCAGAAGCAGAACGCAGATTTTCGAGCTGCATCCGTT 446
BSNT_03996___ 447 A-ACACCTGATCTGATTAAACAGGCACTGGAACGCGCGCTCCATGATGAG 495
| || |||||.|..||.|||..|||..|..||||.|||||..|.|||.|.
BL05286___yrv 447 AGAC-CCTGAACAAATCAAAACGGCCATTAAACGGGCGCTTGAAGATAAA 495
BSNT_03996___ 496 CATCGGGGCCTTGGCACCTATTCTGTAT-------CCATTGATGATCAGG 538
||..|.|||||.|| ||| |||| ||.|.||||||.|||
BL05286___yrv 496 CACAGAGGCCTCGG------TTC-GTATGACGTTGCCGTCGATGATGAGG 538
BSNT_03996___ 539 CGATGGAGCATTTTGCCCACGGATGCGGAGGAGATGTCCGCTCCGCTTTA 588
||.|.||.|||||.||||.|||.|||||.||||||||||||||.|||||.
BL05286___yrv 539 CGCTTGACCATTTGGCCCGCGGCTGCGGCGGAGATGTCCGCTCAGCTTTG 588
BSNT_03996___ 589 AATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGA 638
||||||||.||.||||||||.|||||.||.||||| |.||.||||
BL05286___yrv 589 AATGCGCTCGAACTTGCCGTATTGTCCACAAAGGA------AAACAGTGA 632
BSNT_03996___ 639 ------AATTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAA 682
.||.|.|||||||||.||||.|||.|||||||||.|||||||||
BL05286___yrv 633 GGGAGCGATACGCATTACATTGGAAATCGCAGAAGAATGCCTGCAGAAAA 682
BSNT_03996___ 683 AAAGCTTT-TCTCACGATAAAGATGGTGACGCGCATTATGATGTACTGTC 731
|||||||| || ||.||.||||||||.|||||||||||||||||..|.||
BL05286___yrv 683 AAAGCTTTGTC-CATGACAAAGATGGAGACGCGCATTATGATGTCATTTC 731
BSNT_03996___ 732 CGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACT 781
|||.||.||||||||.|||.|.||||||||||.|||.|||||.||.||||
BL05286___yrv 732 CGCCTTCCAAAAATCAATCAGAGGCTCTGATGTCAATGCTGCACTGCACT 781
BSNT_03996___ 782 ATTTGGCTAGATTAATTGAAGCCGGTGATCTGGAGAGCATCGCAAGACGA 831
|..||||.||..|.||||||||.||.|||.||||.|||.|.|||.|..|.
BL05286___yrv 782 ACATGGCAAGGCTTATTGAAGCGGGGGATTTGGAAAGCCTTGCACGGAGG 831
BSNT_03996___ 832 TTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCGG 881
.|||||||||||||||||||.|||.||||..|.||.||.|||||.||.||
BL05286___yrv 832 CTGCTTGTTATCGCCTATGAGGATGTCGGGCTGGCGAGTCCGCAGGCTGG 881
BSNT_03996___ 882 CCCTAGAGTGCTGAACGCT-------ATTCAGACCGCTGAGCGAGTCGGG 924
|.|| .||||||| |||||.||.||.||.|||.||||.
BL05286___yrv 882 ---TGGA----AGAACGCTTCAAGCCATTCAAACGGCGGAACGAATCGGA 924
BSNT_03996___ 925 TTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTTATTGAGCTTTGCCT 974
|||||.||||||.|.||.||||||||||||||.||.||||||||.|||||
BL05286___yrv 925 TTTCCGGAAGCGAGGATTCCGCTGGCCAACGCCGTGATTGAGCTCTGCCT 974
BSNT_03996___ 975 CTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAG 1024
.||.||.|||||.|||||.||.||.||.|||.|.||.||.||.|||.|||
BL05286___yrv 975 GTCTCCTAAATCGAACTCGGCGATCCTTGCAGTTGACGAAGCGCTGTCAG 1024
BSNT_03996___ 1025 ATATCAGAGCCGGAAAAATTGGTGATGTCCCGAAGCATTTAAAAGACGCG 1074
|..||.|..|||||||.||.||.|||||.|||||.||||||||.|||||.
BL05286___yrv 1025 ACGTCCGCTCCGGAAAGATCGGCGATGTGCCGAACCATTTAAAGGACGCC 1074
BSNT_03996___ 1075 CATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCC 1124
|||||.||||||||....||..|.||.|||||..|.||.||.|||||.||
BL05286___yrv 1075 CATTACAAAGGAGCCGCTGAGCTTGGCAGAGGTGTGGAATACAAATATCC 1124
BSNT_03996___ 1125 GCACAATTACGACAGCGGTTGGGTCGAACAACAATACCTCCCTGATTCTC 1174
||||.|||||||.|.|||.||||||.||||.||.|||||.||||||.|.|
BL05286___yrv 1125 GCACGATTACGAGAACGGCTGGGTCAAACAGCAGTACCTGCCTGATCCGC 1174
BSNT_03996___ 1175 TGAAAAATAAGCAA----TACTATAAGCCGAAACAGACAGGAAAATTCGA 1220
||||||| ||| ||||||.|||||||.|||||.||||||||.||
BL05286___yrv 1175 TGAAAAA----CAAAGTTTACTATCAGCCGAAGCAGACGGGAAAATTTGA 1220
BSNT_03996___ 1221 ATCCGC-CTTAAAGCAGGTGTATGATAAATTAATGAAAAGAAAATAA 1266
|..||| ||.||| ||.||.||.||.||..|.||||||..|||||||
BL05286___yrv 1221 ACTCGCACTGAAA-CAAGTATACGACAAGCTGATGAAACAAAAATAA 1266
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