Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03711 and BL05266

See Amino acid alignment / Visit BSNT_03711 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:44
# Commandline: needle
#    -asequence dna-align/BSNT_03711___yqgQ.1.5803.seq
#    -bsequence dna-align/BL05266___yqgQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03711___yqgQ-BL05266___yqgQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03711___yqgQ-BL05266___yqgQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03711___yqgQ
# 2: BL05266___yqgQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 240
# Identity:     144/240 (60.0%)
# Similarity:   144/240 (60.0%)
# Gaps:          66/240 (27.5%)
# Score: 396.0
# 
#
#=======================================

BSNT_03711___      1 ATGAATACATTTTATGATGTGCAGC---AGCTGTTAAAAAC-GTTTGGCC     46
                     |||||.|||...||||||||.||||   .||||    ||.| ||||||  
BL05266___yqg      1 ATGAAAACAGCCTATGATGTACAGCTTTTGCTG----AAGCAGTTTGG--     44

BSNT_03711___     47 ACAT----TGTTTATTTTGGAGACAGAGAGCTTGAAATTGAGTTTATGCT     92
                       ||    ||||||.||||||||..|.|||||||||.||||.|..|||.|
BL05266___yqg     45 --ATGTTATGTTTACTTTGGAGATCGCGAGCTTGAACTTGAATACATGAT     92

BSNT_03711___     93 GGATGAATTAAAGGAATTATACATG--------AACCACATGATTGAAAA    134
                     |||.|||.|.||||||      |||        ||  |..||||.|||||
BL05266___yqg     93 GGACGAACTGAAGGAA------ATGTTTCTTTCAA--ATTTGATAGAAAA    134

BSNT_03711___    135 GGAGCAGTGGG-CCAGAGCGGCAGCTGTCCTTCGAAA------AGAATTG    177
                     .||.||.|||| .||       ||.|||  |||  ||      |||||  
BL05266___yqg    135 AGAACAATGGGTTCA-------AGGTGT--TTC--AATTTTGCAGAAT--    171

BSNT_03711___    178 GAACAAACAAA-AAACGGAAGAGATTTCTATAAAGGCTAA    216
                     ||||..||||| |.|   ||||||       |||   |||
BL05266___yqg    172 GAACTCACAAATATA---AAGAGA-------AAA---TAA    198


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