Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03547 and BL05258
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:32
# Commandline: needle
# -asequence dna-align/BSNT_03547___rnz.1.5803.seq
# -bsequence dna-align/BL05258___rnz.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03547___rnz-BL05258___rnz.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03547___rnz-BL05258___rnz.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03547___rnz
# 2: BL05258___rnz
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity: 677/979 (69.2%)
# Similarity: 677/979 (69.2%)
# Gaps: 110/979 (11.2%)
# Score: 2277.5
#
#
#=======================================
BSNT_03547___ 1 GTGGAATTACTTTTTTTAGGGACGGGAGCCGGCATCCCCGCCAAGGCGAG 50
.||||.|||.|.||||||||.||||||||.|||||||||||.||..||||
BL05258___rnz 1 TTGGAGTTATTATTTTTAGGAACGGGAGCGGGCATCCCCGCAAAAACGAG 50
BSNT_03547___ 51 AAACGTCACCTCTGTAGCATTGAAATTGCTT---GAAGAAAGGCGTTCGG 97
.||.|||||.||.||.|||||||| |||| |||||||||||.||.|
BL05258___rnz 51 GAATGTCACATCCGTTGCATTGAA---GCTTTTAGAAGAAAGGCGGTCTG 97
BSNT_03547___ 98 TATGGCTTTTTGACTGCGGGGAAGCCACACAGCATCAAATTTTACATACA 147
|.|||||.|||||||||||||||||||||||||||||||||.||||||||
BL05258___rnz 98 TTTGGCTGTTTGACTGCGGGGAAGCCACACAGCATCAAATTCTACATACA 147
BSNT_03547___ 148 ACGATTAAACCTCGTAAAATAGAGAAAATCTTTATTACACACATGCACGG 197
.||||.||||||.|.|||||.||.||.||.||||||||.||..|.|||||
BL05258___rnz 148 TCGATCAAACCTAGAAAAATTGAAAAGATTTTTATTACCCATCTTCACGG 197
BSNT_03547___ 198 CGATCATGTATACGGACTTCCGGGGCTTCTGGGGAGCCGTTCCTTTCAAG 247
|||||||||||||||.||||||||.|||.|..|.|||||.||.||.||.|
BL05258___rnz 198 CGATCATGTATACGGGCTTCCGGGTCTTGTCAGCAGCCGATCTTTCCAGG 247
BSNT_03547___ 248 GCGGAGAGGACGAGCTGACAGTGTACGGACCTAAAGGGATCAAGGCGTTT 297
|.||.||.|.|..||||||.||.||||||||..||||.|||||..|||||
BL05258___rnz 248 GAGGGGAAGGCCCGCTGACCGTATACGGACCGCAAGGAATCAAAACGTTT 297
BSNT_03547___ 298 ATTGAAACAAGC-CTTGCCGTCACGAAAACCCATTTGACATATCCGCTTG 346
.||||||| .|| ||||.|||..||...||.|||.|.|||||||||||||
BL05258___rnz 298 CTTGAAAC-GGCGCTTGACGTATCGGGGACGCATGTCACATATCCGCTTG 346
BSNT_03547___ 347 CGATCCAGGAAATTGAAGAAGGAATCGTGTTTGAGGACGATCAGTTTATT 396
.|||..||||.||||.||||||.|..||.||||||||.||.||||||||.
BL05258___rnz 347 TGATTAAGGAGATTGGAGAAGGGACAGTCTTTGAGGATGACCAGTTTATC 396
BSNT_03547___ 397 GTCAC-------AGCGGTATCTGTTATTCATGGAGTGGAAGCCTTCGGGT 439
||.|| ||| ||||| |||.||..|....||.||.||||
BL05258___rnz 397 GTGACGGCCAGAAGC-GTATC------TCACGGCATTCCCGCTTTTGGGT 439
BSNT_03547___ 440 ACCGTGTGCAGGAAAAAGACGTACCGGG-TTCCTTGAAGGCTGACGTATT 488
||||.||||||||||||||.||.||||| ..||||| |.|||||.|.|.|
BL05258___rnz 440 ACCGCGTGCAGGAAAAAGATGTTCCGGGCGCCCTTG-ACGCTGAAGCACT 488
BSNT_03547___ 489 AAAAGAAAT--GAACATCCCGCCCGGACCTGTATATCAGAAAATCAAAAA 536
.|||||.|| || .||.||||.||.|||||.|||||.|||.|.|||||
BL05258___rnz 489 GAAAGAGATCGGA--GTCTCGCCGGGCCCTGTTTATCAAAAACTGAAAAA 536
BSNT_03547___ 537 AGGCGAAACGGTAACGCTTGAAGA----CGGACGAATCATCAATGGGAAT 582
.||.||.|||||.||..|.||||| |||||||.|| |||||...
BL05258___rnz 537 CGGGGAGACGGTCACATTGGAAGACGGCCGGACGATTC----ATGGGGCA 582
BSNT_03547___ 583 GATTTTCT-GGAGCCTCC-TAAAAAGGGAAGATCTGTTGTGTTCTCCGGT 630
||.|||.| ||| ||.|| .||||||||..||| |||.|..||.|||||.
BL05258___rnz 583 GACTTTATCGGA-CCGCCAAAAAAAGGGCGGAT-TGTCGCCTTTTCCGGG 630
BSNT_03547___ 631 GATACGA--------GAGTAAGTGACAAACTAAAAGA-GCTTGC-----G 666
||||||| |||.|.||| |||| |||||| .
BL05258___rnz 631 GATACGAGGCCATGCGAGAATGTG---------AAGAGGCTTGCCGAAAA 671
BSNT_03547___ 667 AGGGATTGTGATGTGCTTGTTCATGAAGCAACCTTTGCTAAGGAAGACCG 716
|| ..|||||.||..|.||.||||||||.|||||.||.|..|||.|
BL05258___rnz 672 AG-----CCGATGTTCTCATCCACGAAGCAACATTTGCGAAAGGCGACAG 716
BSNT_03547___ 717 TAAACTTGCTTATGATTATTATCACAGTACAACGGAACAAGCGGCTGTAA 766
..|.||.||....||.|||||||||||.||..|.||||||||.||||.||
BL05258___rnz 717 GGAGCTCGCCGGAGACTATTATCACAGCACTTCAGAACAAGCTGCTGAAA 766
BSNT_03547___ 767 CAGCGAAAGAAGCAAGAGCGAAGCAGCTCATTTTAACCCATATCAGCGCA 816
|||||...|||||..|.||.||..|.||.|||||||||||||||||.|||
BL05258___rnz 767 CAGCGCGGGAAGCCTGTGCAAAAAAACTGATTTTAACCCATATCAGTGCA 816
BSNT_03547___ 817 AGATATCAGGGAGA-----TGCTTCTTTGGAGCT------TCAAAAAGAA 855
|||||.|||||.|| ||||| ||.|| |.||..|.||
BL05258___rnz 817 AGATACCAGGGGGAAAACGTGCTT-----GAACTGGTCGATGAAGCAAAA 861
BSNT_03547___ 856 GCGGTTGACGTTTTCCCCAATAGCGTGGCGGCATATGATTTCTTA----- 900
||| .|.||.||..|||.||||||.||.|.|||.|| |||
BL05258___rnz 862 GCG------ATCTTTCCTGATACCGTGGCAGCTTTTGACTT-TTATGAGC 904
BSNT_03547___ 901 --GAGGTAAACGTCCCGCGAGG--CTGA- 924
|||.|.|| |.| ||.|
BL05258___rnz 905 ATGAGATCAA---------AAGAACTTAA 924
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