Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03272 and BL05228

See Amino acid alignment / Visit BSNT_03272 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:56
# Commandline: needle
#    -asequence dna-align/BSNT_03272___ypzA.1.5803.seq
#    -bsequence dna-align/BL05228___ypzA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03272___ypzA-BL05228___ypzA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03272___ypzA-BL05228___ypzA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03272___ypzA
# 2: BL05228___ypzA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 289
# Identity:     189/289 (65.4%)
# Similarity:   189/289 (65.4%)
# Gaps:          41/289 (14.2%)
# Score: 565.5
# 
#
#=======================================

BSNT_03272___      1 GTGACTTCAGAATTTCATAATGAGGATC---AGACTGGCTTTACGGATAA     47
                     .|||..|||||   .|||...||.||||   |.||.||.||||   ||.|
BL05228___ypz      1 ATGAAATCAGA---CCATCGCGATGATCTCGAAACCGGATTTA---ATCA     44

BSNT_03272___     48 GCG---GCAGCTGGAACTAGCGGTGGAAACAGCGCAGAAAACAACAGGAG     94
                     |||   ||||||.|||.|.||.||.|||||.||.||.|||||.||.|||.
BL05228___ypz     45 GCGCAAGCAGCTTGAAATTGCCGTAGAAACTGCTCAAAAAACGACGGGAA     94

BSNT_03272___     95 CCGCGACGAGAGGCCAAAGCAAAACA-------TTAGTTG-ACTCTGCAT    136
                     ..||.|||||        ||||||.|       ||.|.|| |.||.||.|
BL05228___ypz     95 TGGCAACGAG--------GCAAAAGAGCTCCACTTTGCTGAAATCGGCGT    136

BSNT_03272___    137 ACCAAGCCATTGAGGATGCTAGAGAACTGTCACAATCTGAAGAGCTGGCA    186
                     |.|||.|||||||.|||||.|||.|.||||||||..||||.||..|.||.
BL05228___ypz    137 ATCAATCCATTGAAGATGCCAGACAGCTGTCACAGGCTGAGGAATTAGCC    186

BSNT_03272___    187 GCTCTCGATGATCCTGAATTTGTAAAGCAGC-AACAG--CAAC-TGCTAG    232
                     ||.||.|||||   .||.|||.||||    | |||||  |||| |.|||.
BL05228___ypz    187 GCACTGGATGA---AGATTTTTTAAA----CGAACAGCTCAACATACTAA    229

BSNT_03272___    233 ATGACAGCGAGCATCAGCTGGATGAATTCAAAGAATAA-    270
                     ||||..||.||||||||||.|||||| |||.||.||.| 
BL05228___ypz    230 ATGATTGCCAGCATCAGCTTGATGAA-TCACAGCATTAA    267


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