Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03135 and BL05214
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_03135.1.5803.seq
# -bsequence dna-align/BL05214.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03135-BL05214.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03135-BL05214.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03135
# 2: BL05214
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity: 310/558 (55.6%)
# Similarity: 310/558 (55.6%)
# Gaps: 141/558 (25.3%)
# Score: 833.0
#
#
#=======================================
BSNT_03135 1 ATGGCACTGACAAAAGAACAAACACAGCATCTCTATCATAAATT-----G 45
|||.||.|||||.|.|||||||.||||||.||.||..||||||| |
BL05214 1 ATGCCATTGACAGAGGAACAAAAACAGCACCTTTACGATAAATTAATCAG 50
BSNT_03135 46 CTCGATATGCAAAAA-GAATT------------GTCTGGCGAGAAAAAGG 82
|| || ||||| |||.| |||||..|.|
BL05214 51 CT---TA---AAAAACGAAATCACAGGTACAAAGTCTGAGGTG------- 87
BSNT_03135 83 AAACAGAATCAATGACGGAAGAAGTGGGGGAGCTTTCCAATGGGGTTGAC 132
||| .|.||||..||||||...||.||..|.||.||.||..|||||
BL05214 88 ---CAG--CCGATGAATGAAGAAACAGGCGAATTGTCAAACGGTATTGAC 132
BSNT_03135 133 AACCATATGGCAGACCA---CGGGACGCTCGT---CACAGACCGGATGAC 176
||.|||.|.||.||||| ||| ||| .||.||.||.||||.
BL05214 133 AATCATCTTGCCGACCATGCCGG------CGTGTATACCGAACGAATGAG 176
BSNT_03135 177 AGAC------------CAAACAG------------TGAGAGAGATTGACC 202
.||| |||.|.| |||.||||||.||
BL05214 177 GGACCAGGCTTTCCGGCAATCGGACGATGCTTTGCTGAAAGAGATCGA-- 224
BSNT_03135 203 GGGAGCTGTTAGAGGAGGTCAACCGTGCATTACAAAAGATGAAAGACGGA 252
||| .||.|||.|.|.||||||||||||.
BL05214 225 ----------AGA------------CGCTTTAAATAGGATGAAAGACGGC 252
BSNT_03135 253 ACTTACGGCGTGTGTGAAAAAACCGGCCAAGAGATTCCTTACGAAAGACT 302
||.||||||..||||||||.|||.||..||||.||.||.||.|||.|.||
BL05214 253 ACATACGGCACGTGTGAAACAACGGGAAAAGAAATCCCCTATGAACGCCT 302
BSNT_03135 303 TGAAGCTGTTCCTTATGCAAGAATGACAGTTGAGGCCCAAGCTGATGTGG 352
||||||..||||.|||||..|||..||.|..||.||.|||||.||
BL05214 303 TGAAGCGATTCCATATGCGCGAAGAACCGCCGAAGCTCAAGCGGA----- 347
BSNT_03135 353 AGGATGATCTGGAGACAGATGCTCCTTCTTATGAAAGAGAGTTTCATGA- 401
||.|.||...|.||||.| .|.||||| ||||
BL05214 348 AGCAAGACAAGAAGACCG--------------CACAGAGA-----ATGAT 378
BSNT_03135 402 ---------ACAGG-----TAAAAGACTTATCCAACAAAGAAACAATTGA 437
|||.| |.||.||.||..|.||.||||||||.||.||
BL05214 379 CGGCAATTTACACGGCAAATGAAGGATTTGACGAATAAAGAAACGATGGA 428
BSNT_03135 438 TCAAAAAAGCTCGCAGACG--TATGAA-ATCTTGGATCGTGAACAAGATT 484
.|||||| |...||.||| |||||| ..||| ||.|..|||||.||.|
BL05214 429 CCAAAAA--CATTCATACGTCTATGAACGGCTT-GACCAGGAACAGGACT 475
BSNT_03135 485 CGAAGTAA 492
|.||.|||
BL05214 476 CCAAATAA 483
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