Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02787 and BL05173
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02787___ymaF.1.5803.seq
# -bsequence dna-align/BL05173___ymaF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02787___ymaF-BL05173___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-BL05173___ymaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: BL05173___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 435
# Identity: 287/435 (66.0%)
# Similarity: 287/435 (66.0%)
# Gaps: 51/435 (11.7%)
# Score: 895.0
#
#
#=======================================
BSNT_02787___ 1 ------------TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCC 38
.||...|||||||||||.||.|||||||||||.||.||
BL05173___yma 1 GTGAACGAAAACATGACGCTGTATCAGTCGGATTGGTCAAAAGCGCCTCC 50
BSNT_02787___ 39 CCACGCACATGCCTATCATGTC-AAAACAACGAGAGAACAGGGCCATTAT 87
|||.||.||.||||| ||.|.| |.||||||||..|...||||.|||||.
BL05173___yma 51 CCATGCCCACGCCTA-CAGGGCGAGAACAACGACTGCCGAGGGACATTAC 99
BSNT_02787___ 88 CATCTCATTGAAGGGTTTACTCAGCCGGCAAAC-GGATCAAATACCGATC 136
||.||.|||||.||.|||.|.|||||||||||| |||.| |||||.|||.
BL05173___yma 100 CACCTAATTGAGGGTTTTTCCCAGCCGGCAAACGGGAGC-AATACAGATG 148
BSNT_02787___ 137 AGCATACACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTT 186
.|||....||||..|||.|.||.||.|||||.||.|...|.||.||||..
BL05173___yma 149 GGCACGTTCATTTTTATTCCGGAATTACTTCTTTCGTCGATGGTCATTAC 198
BSNT_02787___ 187 CATCGGTATTACGGAATCTCAGGGCCGGCGATTCCCTTAGCAGATGGCAC 236
|||.|||||||.|..||..|.|||||.||||||||....||.||.|||||
BL05173___yma 199 CATAGGTATTATGCGATTACGGGGCCAGCGATTCCGCGGGCGGACGGCAC 248
BSNT_02787___ 237 ACATTATCATGAAATCGAAGAAACGACATATCTGGCTTATAACGAG---- 282
.||.||||||||||||||.|..|||||.|||.||||.|||...|.|
BL05173___yma 249 GCACTATCATGAAATCGAGGGCACGACCTATTTGGCATATTCTGCGGCTC 298
BSNT_02787___ 283 --CCGATTGAGATCCAG-TACGGAGGGGTTGTGTA------CGATCCCGG 323
|||.| ||| ||.||.||.||.||.|| |||| ||
BL05173___yma 299 CCCCGGT-------CAGATATGGCGGAGTCGTTTATGTAAGCGAT---GG 338
BSNT_02787___ 324 AGATGACAGAAGAAAAACGCATCGTCATAACC--TAAAAGGAAAGACAAG 371
| ||||..| |||.|||.||.||| || |.||.||..|.|||||
BL05173___yma 339 A-ATGAAGG-----AAAGGCACCGGCAT--CCTTTTAAGGGTTACACAAG 380
BSNT_02787___ 372 GGAAATTGTCGGCAATGAGCCGCTCGGCTGGTAG- 405
.|||||.|||||.|||||||||.|.||||||| |
BL05173___yma 381 AGAAATCGTCGGAAATGAGCCGATTGGCTGGT-GA 414
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