Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02787 and BL05173

See Amino acid alignment / Visit BSNT_02787 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02787___ymaF.1.5803.seq
#    -bsequence dna-align/BL05173___ymaF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02787___ymaF-BL05173___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-BL05173___ymaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: BL05173___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 435
# Identity:     287/435 (66.0%)
# Similarity:   287/435 (66.0%)
# Gaps:          51/435 (11.7%)
# Score: 895.0
# 
#
#=======================================

BSNT_02787___      1 ------------TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCC     38
                                 .||...|||||||||||.||.|||||||||||.||.||
BL05173___yma      1 GTGAACGAAAACATGACGCTGTATCAGTCGGATTGGTCAAAAGCGCCTCC     50

BSNT_02787___     39 CCACGCACATGCCTATCATGTC-AAAACAACGAGAGAACAGGGCCATTAT     87
                     |||.||.||.||||| ||.|.| |.||||||||..|...||||.|||||.
BL05173___yma     51 CCATGCCCACGCCTA-CAGGGCGAGAACAACGACTGCCGAGGGACATTAC     99

BSNT_02787___     88 CATCTCATTGAAGGGTTTACTCAGCCGGCAAAC-GGATCAAATACCGATC    136
                     ||.||.|||||.||.|||.|.|||||||||||| |||.| |||||.|||.
BL05173___yma    100 CACCTAATTGAGGGTTTTTCCCAGCCGGCAAACGGGAGC-AATACAGATG    148

BSNT_02787___    137 AGCATACACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTT    186
                     .|||....||||..|||.|.||.||.|||||.||.|...|.||.||||..
BL05173___yma    149 GGCACGTTCATTTTTATTCCGGAATTACTTCTTTCGTCGATGGTCATTAC    198

BSNT_02787___    187 CATCGGTATTACGGAATCTCAGGGCCGGCGATTCCCTTAGCAGATGGCAC    236
                     |||.|||||||.|..||..|.|||||.||||||||....||.||.|||||
BL05173___yma    199 CATAGGTATTATGCGATTACGGGGCCAGCGATTCCGCGGGCGGACGGCAC    248

BSNT_02787___    237 ACATTATCATGAAATCGAAGAAACGACATATCTGGCTTATAACGAG----    282
                     .||.||||||||||||||.|..|||||.|||.||||.|||...|.|    
BL05173___yma    249 GCACTATCATGAAATCGAGGGCACGACCTATTTGGCATATTCTGCGGCTC    298

BSNT_02787___    283 --CCGATTGAGATCCAG-TACGGAGGGGTTGTGTA------CGATCCCGG    323
                       |||.|       ||| ||.||.||.||.||.||      ||||   ||
BL05173___yma    299 CCCCGGT-------CAGATATGGCGGAGTCGTTTATGTAAGCGAT---GG    338

BSNT_02787___    324 AGATGACAGAAGAAAAACGCATCGTCATAACC--TAAAAGGAAAGACAAG    371
                     | ||||..|     |||.|||.||.|||  ||  |.||.||..|.|||||
BL05173___yma    339 A-ATGAAGG-----AAAGGCACCGGCAT--CCTTTTAAGGGTTACACAAG    380

BSNT_02787___    372 GGAAATTGTCGGCAATGAGCCGCTCGGCTGGTAG-    405
                     .|||||.|||||.|||||||||.|.||||||| | 
BL05173___yma    381 AGAAATCGTCGGAAATGAGCCGATTGGCTGGT-GA    414


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