Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02437 and BL05148

See Amino acid alignment / Visit BSNT_02437 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_02437___yktA.1.5803.seq
#    -bsequence dna-align/BL05148___yktA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02437___yktA-BL05148___yktA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02437___yktA-BL05148___yktA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02437___yktA
# 2: BL05148___yktA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     204/285 (71.6%)
# Similarity:   204/285 (71.6%)
# Gaps:          27/285 ( 9.5%)
# Score: 705.0
# 
#
#=======================================

BSNT_02437___      1 ATGGA------GTATCAATATCCGATGAATGAAGATTGGACAACCGAAGA     44
                     |||||      |||.||||||||||||||||||||.||||..||.||.||
BL05148___ykt      1 ATGGAAGAAGGGTACCAATATCCGATGAATGAAGACTGGAGCACAGAGGA     50

BSNT_02437___     45 AGCAGTGGATGTGATTGCATTTTTCCAGCAGGTTGAGCTTGCATATGAAA     94
                     |||..|.||.||.||..|.|||||.|||..|||||||||.||.|||||||
BL05148___ykt     51 AGCGATAGACGTCATATCGTTTTTTCAGGCGGTTGAGCTCGCTTATGAAA    100

BSNT_02437___     95 AAGGGGCGGATCGTGAAGAACTGCTTAAAGCTTACCGCCGTTTCAAGGAA    144
                     ||||.|..||.||.||.|..|||.|.|..|||||||||||.||.||.|||
BL05148___ykt    101 AAGGCGTAGAGCGAGACGTGCTGATGAGTGCTTACCGCCGCTTTAAAGAA    150

BSNT_02437___    145 ATTGTACCGGGGAAGGCCGAGGAAAAAAAGCTATGCGGCGAGTTTGAGGA    194
                     ||.||.|||||.||.||.||||||||||||||.|||.||.|||||||.||
BL05148___ykt    151 ATAGTTCCGGGAAAAGCGGAGGAAAAAAAGCTGTGCAGCCAGTTTGAAGA    200

BSNT_02437___    195 A-CAAAGTACATATTCTCCTTATC--GCACGGTCAAACAGGCGA--GA--    237
                     | |.|...|| ||.|||||.||||  |||  ||||||.|.||.|  ||  
BL05148___ykt    201 AGCGAGCGAC-TACTCTCCGTATCAAGCA--GTCAAAAAAGCAAAGGAAC    247

BSNT_02437___    238 -----GAATCTGATATCGCGAAGATTAAGATGTAA    267
                          |||   ||||   ||||.|||||.||||||
BL05148___ykt    248 AAACGGAA---GATA---CGAAAATTAAAATGTAA    276


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