Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01979 and BL05115

See Amino acid alignment / Visit BSNT_01979 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_01979___yjcH.1.5803.seq
#    -bsequence dna-align/BL05115___yjcH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01979___yjcH-BL05115___yjcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01979___yjcH-BL05115___yjcH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01979___yjcH
# 2: BL05115___yjcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity:     533/748 (71.3%)
# Similarity:   533/748 (71.3%)
# Gaps:          50/748 ( 6.7%)
# Score: 1790.0
# 
#
#=======================================

BSNT_01979___      1 ATGGCACCGAAAAACGGCACAG---TGCAAGAAAAGAAATTCTTTTCAAA     47
                     .||||...|||||..||   ||   |.||.||.||.||..|.|||||..|
BL05115___yjc      1 TTGGCTATGAAAACAGG---AGTCATTCAGGAGAAAAAGCTTTTTTCGGA     47

BSNT_01979___     48 AGAGCTTAACGAGGAAAT-GACCTTGCTTGTTTATCTGCCGTCCAACTAC     96
                     ||||||...||||||||| ||.||| ||.||.|||.||||||||..||.|
BL05115___yjc     48 AGAGCTCGGCGAGGAAATGGAGCTT-CTCGTCTATTTGCCGTCCTCCTTC     96

BSNT_01979___     97 TCCCCGCTTTATAAATACCATGTCATTATCGCGCAGGACGGCCACGATTA    146
                     ||.||||||||.|||||.|||||.||.|||||.|||||.||.||.||.||
BL05115___yjc     97 TCGCCGCTTTACAAATATCATGTGATCATCGCACAGGATGGACATGACTA    146

BSNT_01979___    147 TTTCAGGCTGGGGAGAATCGGCAGACAGGTTGAGGAATTGCTGTCGAAAC    196
                     ||||.||||.|||.|.|||.|||||||||||||.|||.||.||.||||..
BL05115___yjc    147 TTTCCGGCTCGGGCGCATCAGCAGACAGGTTGAAGAACTGTTGGCGAACG    196

BSNT_01979___    197 GCGAAATAGACCGGAGCATTATTATCGGTGTTCCTTATAAGGATGTAAAA    246
                     |.|||||.||..|.|||||.||.|||||..||||.||.||..|.|||.|.
BL05115___yjc    197 GTGAAATCGAAAGAAGCATCATCATCGGCATTCCGTACAAAAACGTACAG    246

BSNT_01979___    247 GAGCGCAGAA-----ACACCTATCATCCGGAGGGTTCAAAATTTTCG--G    289
                     ||   .||||     |||  ||.||||||||.||.||||||  ||||  |
BL05115___yjc    247 GA---AAGAAGGCTTACA--TACCATCCGGAAGGGTCAAAA--TTCGAAG    289

BSNT_01979___    290 CTTATAAACGGTTCATCGCCCATGAGCTCGTTCCTTTTGCAGA-TGATGA    338
                     |.||||||||.||..|.||..||||.|||||.|||||..|.|| .|| ||
BL05115___yjc    290 CGTATAAACGTTTTTTGGCAAATGAACTCGTCCCTTTCACCGACAGA-GA    338

BSNT_01979___    339 GTATCCAACCTATCAGATCGGTTACGGCCGAACGCTGATCGGTGATTCGC    388
                     ||||||.||.|||||..||||.|..|||.|.||||||||.||.|||||||
BL05115___yjc    339 GTATCCGACATATCAAGTCGGATCAGGCAGGACGCTGATAGGGGATTCGC    388

BSNT_01979___    389 TCGGAGCAACCGTGTCACTTATGACAGCGCTTGATTATCCGAATATGTTT    438
                     ||||||.|||.||.||.||.|||||.||||||||.||.|||||||||||.
BL05115___yjc    389 TCGGAGGAACGGTTTCTCTCATGACGGCGCTTGACTACCCGAATATGTTC    438

BSNT_01979___    439 GGCAACATCATCATGCAGTCTCCCTATGTTGACAAACACGTACTAGAAGC    488
                     ||.|||.||||.||||||||.||.|||||.|||...||.||.||.||...
BL05115___yjc    439 GGGAACGTCATTATGCAGTCACCTTATGTAGACCGCCATGTTCTCGATAA    488

BSNT_01979___    489 CGTAAAACAGTCAGACGATATCAAACACCT----CTCTATTT--AT----    528
                     .||.||||||||   |||| ||     |||    || |||||  ||    
BL05115___yjc    489 AGTGAAACAGTC---CGAT-TC-----CCTGCAGCT-TATTTCAATTTGC    528

BSNT_01979___    529 CACCAAATCGGAACAAAAGAAACTGACGTCCACACGACAGACGGGAACAT    578
                     |||||||||||....||.|||||.|.||||.|.|||||.||.|...|.||
BL05115___yjc    529 CACCAAATCGGCGAGAAGGAAACCGCCGTCAAAACGACCGATGATCAAAT    578

BSNT_01979___    579 TCTGGACTTTACAGAACCGAACCGGGAGC---TGAAACAGCTGCTGGAGA    625
                     |.||||.||.||||..||.||   .||||   |.|||.||.||||.||..
BL05115___yjc    579 TTTGGATTTCACAGGTCCAAA---TGAGCAATTAAAAGAGTTGCTTGAAT    625

BSNT_01979___    626 AAAAGCTTTCCGATTATGATTTCGAGCCATTTGACGGAGACCACAAATGG    675
                     .|||||...|..|.||.||||||.|..|.||||||||.||.|||||||||
BL05115___yjc    626 CAAAGCAGACAAACTACGATTTCAAAGCTTTTGACGGGGATCACAAATGG    675

BSNT_01979___    676 ACATACTGGCAGCCGCTCATCACCCCGGCGCTGAAAAAAATGCTTTAA    723
                     ||.|||||||||||||||||||||||.||..|.|||||||||||.||.
BL05115___yjc    676 ACGTACTGGCAGCCGCTCATCACCCCCGCTTTAAAAAAAATGCTGTAG    723


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