Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01940 and BL05110

See Amino acid alignment / Visit BSNT_01940 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:28
# Commandline: needle
#    -asequence dna-align/BSNT_01940___yjbL.1.5803.seq
#    -bsequence dna-align/BL05110___yjbL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01940___yjbL-BL05110___yjbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01940___yjbL-BL05110___yjbL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01940___yjbL
# 2: BL05110___yjbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 404
# Identity:     253/404 (62.6%)
# Similarity:   253/404 (62.6%)
# Gaps:          73/404 (18.1%)
# Score: 755.0
# 
#
#=======================================

BSNT_01940___      1 ATGCAAAACAGAATCGAAATT-TTGAA-------TGCAACATTATCGGAT     42
                     |||||.||||||||.||.||| ..|||       |||.|.|..|.|||.|
BL05110___yjb      1 ATGCAGAACAGAATTGAGATTACAGAAGCCAATCTGCGAAACGACCGGCT     50

BSNT_01940___     43 GATCAGCTTCGCCTTACTTGTCAGACAG---AAGGAA--ACGAAGCGGAA     87
                     |.|             .|||.|   |||   ||..||  |||.||||||.
BL05110___yjb     51 GGT-------------GTTGAC---CAGCGAAATCAATGACGGAGCGGAG     84

BSNT_01940___     88 CGCAAGCCGTCAGGTCAAATGCTTGTTGATTCTGACCACTTTGCTTTTGT    137
                     ||.||||||.|.||.|..|||||....||.||.||.||.|||||.|||||
BL05110___yjb     85 CGGAAGCCGGCCGGACGCATGCTGACAGACTCCGATCATTTTGCATTTGT    134

BSNT_01940___    138 ATACATACTTGAATTAGCTGATTCTTTTGAATATGTCATTATAAAGGAA-    186
                     |||||||||||||...|..||.||.||||||||.||||||.||||.||| 
BL05110___yjb    135 ATACATACTTGAACAGGACGAATCCTTTGAATACGTCATTTTAAACGAAG    184

BSNT_01940___    187 -CATGTATGGCCGGAAC-TGAAGCAGGCCCATGCACAAAAAATACCGGT-    233
                      ||  |.|||.|.||.| |.|||| |||||.||        |..||||| 
BL05110___yjb    185 GCA--TCTGGTCCGATCTTAAAGC-GGCCCTTG--------ACGCCGGTC    223

BSNT_01940___    234 ------TGTTT-----TAGAGGCAGGAGACCAAACAATTGAACTGGCA--    270
                           |||||     ||..||         |||| |..||.|||| |  
BL05110___yjb    224 TTCCTGTGTTTTTACATATCGG---------AAAC-ACGGAGCTGG-AGC    262

BSNT_01940___    271 -----GGCCTGCATGAGGAGCTGGAATATCTTTTAGAAAATATAAAAGAT    315
                          ||..|.|||||.|||||.|.||||.|..||||.|||||.||||||
BL05110___yjb    263 TTAACGGGTTCCATGATGAGCTCGGATATTTAATAGAGAATATTAAAGAT    312

BSNT_01940___    316 AATGCAAACTATGGAGAAGAAATGGAAGAAAAAGTGAAACACGTGTTTTT    365
                     ||||||||.|||||.||||||||||||||.|.||||||||...|.||..|
BL05110___yjb    313 AATGCAAATTATGGCGAAGAAATGGAAGAGAGAGTGAAACGGATATTCCT    362

BSNT_01940___    366 ATAG    369
                     .|||
BL05110___yjb    363 CTAG    366


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