Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03052 and BL05087
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:44
# Commandline: needle
# -asequence dna-align/BSNT_03052___yogA.1.5803.seq
# -bsequence dna-align/BL05087___yogA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03052___yogA-BL05087___yogA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03052___yogA-BL05087___yogA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03052___yogA
# 2: BL05087___yogA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1043
# Identity: 656/1043 (62.9%)
# Similarity: 656/1043 (62.9%)
# Gaps: 103/1043 ( 9.9%)
# Score: 1750.5
#
#
#=======================================
BSNT_03052___ 1 ATGAAAGCTGTAATTCACAACGGAA--AAGCCGGTC-TTCTGGGGT---- 43
||||||||..|.||.||..|.|||| ||| ||.| |||.|||.|
BL05087___yog 1 ATGAAAGCGATCATCCATGAAGGAATCAAG--GGCCTTTCAGGGCTGAAA 48
BSNT_03052___ 44 TAT-CAGTTCAGGACGTTCCATCAACAAA--GCCTGGATACGGAGAGGTA 90
||| || ||||||.| |.||||| |||.||...|||.||.||.
BL05087___yog 49 TATACA------GACGTTTC--CGACAAAACGCCCGGCCCCGGTGAAGTC 90
BSNT_03052___ 91 AAGGTTAAAT-----TAAAATCTGCAGGCCTGAATCATCGTGACTTGTTT 135
| |||| |.|||.|.||.||.|||||.||.||.||||||||.
BL05087___yog 91 A-----AAATCAGGCTGAAAGCAGCCGGGCTGAACCACCGCGACTTGTTC 135
BSNT_03052___ 136 CTTAT--------GAAAAACAAATCTGAACAAGATCCTCACATGATACTG 177
|||.| |||| .|.|...|||.|.|...|.||.|..
BL05087___yog 136 CTTTTTCAGTCCAGAAA--------GGCAGGCGATGCCCCGTTTATTCCC 177
BSNT_03052___ 178 GGTTCTGACGGCGCGGGTATCATCGAAGAGATTGGTGAAGGCGT----GA 223
||.||.|||||.||.|||||.||||||||||..||||||||||| ||
BL05087___yog 178 GGATCCGACGGAGCAGGTATGATCGAAGAGACAGGTGAAGGCGTTCGGGA 227
BSNT_03052___ 224 AAAATGTTACT----GTTCAGACAGAAGTAGTCATTTTCCCGA-CATTGA 268
.|| |||||.|||||.||..||||....|||| |||.|
BL05087___yog 228 --------CCTCGCCGTTCATACAGAGGTGATCATCAATCCGAGCATCG- 268
BSNT_03052___ 269 ACTGGGATTTGACAGAAAATGTTCCACCTGTACCTGAGATTCTGGGAGGT 318
.||||||.|..||.||....|||||.|..||.||.||.|||||.||.||.
BL05087___yog 269 GCTGGGAATATACGGATTCCGTTCCGCAAGTGCCGGACATTCTCGGCGGC 318
BSNT_03052___ 319 CCTTCGGACGGAACACTTGCTGAATATGTGATCATTCCTTCACAAAATGC 368
||.||.|||||.||..|.||.||..||||.|||.|.||..| .|.||
BL05087___yog 319 CCCTCTGACGGGACTTTCGCAGAGCATGTCATCGTCCCGGC----GAAGC 364
BSNT_03052___ 369 A----ATCAAAAAACCTGCTTATTTATCTTGGGAAGAAGCGGGCGTTTTA 414
| .|.|||||.||.||..|..|.||.|||||.|||||.|||||..|.
BL05087___yog 365 ACGTGTTGAAAAAGCCGGCGCACCTTTCCTGGGAGGAAGCAGGCGTCCTG 414
BSNT_03052___ 415 CCTTTATCCGCTTTAACCGCATATCGGGCCTTGTTTACAAAGGGGCAATT 464
||||||||||||.|.|||||.||..||||.||.|||||.||.||.||.||
BL05087___yog 415 CCTTTATCCGCTCTGACCGCTTACAGGGCTTTATTTACGAAAGGACATTT 464
BSNT_03052___ 465 AAAAAAAGGCGAGCATCTATTGATACCCGGCATCGGCAGCGGTGTAGCAA 514
|.||||||||||.||..|..|.|||||.||...||||.|.||.||.||.|
BL05087___yog 465 AGAAAAAGGCGAACACATTCTCATACCGGGAGCCGGCGGAGGCGTCGCCA 514
BSNT_03052___ 515 CCTACGCTTTATTTATGGCTAAGGCGATTGGGGCAACAGTAAGCGTGACC 564
|..|.||..|..|.|||||.|||||....||.||....||.|..||.|||
BL05087___yog 515 CAAATGCGCTGCTCATGGCAAAGGCCGCGGGCGCGCGGGTGATTGTAACC 564
BSNT_03052___ 565 TCCCGCAGTGAGGAGAAAAGAAAAAAGGCGCT--GAAATTAGGTGCTGAT 612
|||||.||.||.||.|||||||||.|.||||| |..|| ||.||.||.
BL05087___yog 565 TCCCGAAGCGAAGAAAAAAGAAAAGAAGCGCTCCGCTAT--GGGGCGGAC 612
BSNT_03052___ 613 TACGCATTTGACAGCTACAGCAATTGGGATG--AGCAGTTGCAGGGAAAA 660
|.||||.||||||||..|.||...|||.|.| ||| |||.|.||..||
BL05087___yog 613 TTCGCAATTGACAGCCGCGGCCTGTGGAAGGAAAGC--TTGGATGGGGAA 660
BSNT_03052___ 661 AAGGCGGATGTTGTTCTTGACAGCATAGGACCTGCCCTCTTTTCGGAATA 710
..||..|||.|..||||.||||||||.||.||.| ||.|||||...|||.
BL05087___yog 661 CGGGTCGATTTAATTCTCGACAGCATCGGTCCCG-CCACTTTTGCAAATT 709
BSNT_03052___ 711 CTTCCGCCATG---TAAAACCAAATGGCCGTATTGTCAGCTTTGGGGCAA 757
.||.|| ||| |.|||||.||.||..|.||.||||..||.||.||.|
BL05087___yog 710 ATTTCG--ATGTCATTAAACCGAACGGAAGGATCGTCATTTTCGGTGCCA 757
BSNT_03052___ 758 GCTCAGGGGATA--ATCTCAGTTTTCCGGTGCGTTCTCTATTCTTTCCTC 805
||||.||.||.| ||| ||| .|||||.||||.||.||.||.||.||.|
BL05087___yog 758 GCTCTGGAGAAAGTATC-CAG-CTTCCGCTGCGCTCGCTCTTTTTCCCGC 805
BSNT_03052___ 806 AGGTCAATGTTTTGGGAACCTCGATGGGAAGCGGTGAGGAATTT---CAA 852
||.|||...|..|.||.||.||||||||.|||...||.|||||| |||
BL05087___yog 806 AGATCAGCATCATCGGCACTTCGATGGGCAGCCTCGAAGAATTTCGGCAA 855
BSNT_03052___ 853 GCTATGCTCGCTTTCATTGACAAACATAAGCTGCGGCCTGTAATTGACCG 902
|||.|.|.|||.||.||....|||...||...|||.||.||.||.|.
BL05087___yog 856 ---ATGATTGATTTTATCGAACGCCATTCCCTTAAGCCGGTGATCGATCA 902
BSNT_03052___ 903 GATATATCCTTTAGAAAAAGCATGTGAAGCATATAAAAGAATGCAGGAAG 952
..|||.|||||||..|.||||...|...||.|.||||.|.|||.|.||.|
BL05087___yog 903 AGTATTTCCTTTATCAGAAGCGGTTCCGGCCTTTAAACGGATGAAAGACG 952
BSNT_03052___ 953 GCAGA-CAGTTTGGAAACATCGGGATCG-TAATGGA---ATAA 990
| .|| |||||||||||.||| |.||.| .|||.|| .|||
BL05087___yog 953 G-GGAGCAGTTTGGAAATATC-GCATTGCAAATAGACGGGTAA 993
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