Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01413 and BL05071
See
Amino acid alignment /
Visit
BSNT_01413 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:56
# Commandline: needle
# -asequence dna-align/BSNT_01413___yfhD.1.5803.seq
# -bsequence dna-align/BL05071___yfhD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01413___yfhD-BL05071___yfhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01413___yfhD-BL05071___yfhD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01413___yfhD
# 2: BL05071___yfhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 207
# Identity: 153/207 (73.9%)
# Similarity: 153/207 (73.9%)
# Gaps: 27/207 (13.0%)
# Score: 529.5
#
#
#=======================================
BSNT_01413___ 1 ATGGGCAGAAAT-CATATCCACAAAAACCGTGATAAAAACAAACAAAAGC 49
|||||||||||| || ||||||||||||||.|||||||||||.|||||.|
BL05071___yfh 1 ATGGGCAGAAATGCA-ATCCACAAAAACCGGGATAAAAACAAGCAAAAAC 49
BSNT_01413___ 50 TTCCACAAGTTCCTGATGCCTTA-AAAAGGGAAACTGACGGCGTTTACGA 98
|.||.|||||||||||| |..|| ||..|.|||.|||||||.||.||.||
BL05071___yfh 50 TCCCTCAAGTTCCTGAT-CAGTATAAGCGAGAAGCTGACGGAGTGTATGA 98
BSNT_01413___ 99 AGAATATTCAAGC-GAGCTTGCTGATGCA-GATGACCGCGAAGCGCAAG- 145
.|||||||| ||| ||.||.||.||| || ||||||||||||||.||||
BL05071___yfh 99 GGAATATTC-AGCAGAACTCGCCGAT-CAGGATGACCGCGAAGCACAAGC 146
BSNT_01413___ 146 -AGCGTGCGAAAGCAGCCGACAACAGAGCGAAAAAG---------AAATC 185
.||.||| |.|||||.||.||..|.||||||||| |||
BL05071___yfh 147 CCGCATGC--AGGCAGCTGATAAGCGCGCGAAAAAGCGGCAGTCAAAA-- 192
BSNT_01413___ 186 TCGTTAA 192
|||
BL05071___yfh 193 ----TAA 195
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.