Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01013 and BL05063
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_01013___ydhT.1.5803.seq
# -bsequence dna-align/BL05063___ydhT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01013___ydhT-BL05063___ydhT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01013___ydhT-BL05063___ydhT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01013___ydhT
# 2: BL05063___ydhT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1108
# Identity: 819/1108 (73.9%)
# Similarity: 819/1108 (73.9%)
# Gaps: 44/1108 ( 4.0%)
# Score: 2932.5
#
#
#=======================================
BSNT_01013___ 1 TTGT-TTAAGAAACATACGATCTCTTTGCTCATTATATTTT--------T 41
|| ..||.|||||| || ||||.||| ||.|| |
BL05063___ydh 1 --GTGAAAAAAAACAT-CG-----TTTGTTCA----ATCTTCGCGCTGCT 38
BSNT_01013___ 42 ACTTGCGTCTGCTGTTTTAGCAAAACCAATTGAAGCGCATACTGTGTCGC 91
.|||||.|.|||.|||| |..|.||.|...|.||.||.||.||.||.|
BL05063___ydh 39 CCTTGCTTTTGCCGTTT---CGCAGCCGAGCTATGCACACACCGTTTCTC 85
BSNT_01013___ 92 CTGTGAATCCTAATGCCCAGCAGACAACAAAAGCAGTGATGAACTGGCTT 141
|.|||||.||.||||||||||.|||.||.|||||.||||||||||||||.
BL05063___ydh 86 CGGTGAACCCGAATGCCCAGCCGACGACGAAAGCGGTGATGAACTGGCTC 135
BSNT_01013___ 142 GCGCACCTGCCGAACCGAACGGAAAACAGAGTCCTTTCCGGAGCGTTCGG 191
||.||||||||.||.||.|||||||.|.|.||..|.|||||.||||||||
BL05063___ydh 136 GCCCACCTGCCCAATCGGACGGAAAGCCGGGTGATGTCCGGGGCGTTCGG 185
BSNT_01013___ 192 AGGTTACAGTCATGACACATTTTCTATGGCTGAGGCTGATAGAATCCGAA 241
|||.|||||.|..|||||||||||.|.||||||.||.||..|.||| ||
BL05063___ydh 186 AGGATACAGCCTCGACACATTTTCAACGGCTGAAGCCGACCGGATC--AA 233
BSNT_01013___ 242 GC--GCCACCGGGCAATCGCCTGCTATTTACGGCTGCGATTATGCCAGAG 289
.| ||.||.||.||...|||.||.||.|||||||||||||||||.||||
BL05063___ydh 234 ACAGGCAACAGGACAGCTGCCGGCCATATACGGCTGCGATTATGCAAGAG 283
BSNT_01013___ 290 GGTGGCTTGAAACAGCTAAAATTGAAGATTCAATAGATGTA-AGCTGCAA 338
|.|||||.||..|.|..||.||.|..|||.|.||.|| .|| ||||||||
BL05063___ydh 284 GATGGCTGGAGCCGGAAAAGATCGCCGATACGATTGA-CTACAGCTGCAA 332
BSNT_01013___ 339 CGGTGATTTAATGTCGTATTGGAAAAATGGCGGAATTCCGCAAATCAGTT 388
|.|||||||.||..|.||.|||||||..||.||.||||||||||||||..
BL05063___ydh 333 CCGTGATTTGATCGCATACTGGAAAAGCGGAGGCATTCCGCAAATCAGCA 382
BSNT_01013___ 389 TGCACCTGGCGAACCCTGCTTTTCAGTCAGGGCATTTTAAAACACCGATT 438
|||||||.||.|||||.||.|||...||.||.||||.||||||.|.||||
BL05063___ydh 383 TGCACCTCGCAAACCCCGCGTTTACTTCGGGTCATTATAAAACTCAGATT 432
BSNT_01013___ 439 ACAAACGATCAGTATAAAAAAATACTAGATTCTTCAACAGCAGAAGGAAA 488
.|||||...||||||.|.|.|||..||||||||||.||..|.||||||||
BL05063___ydh 433 TCAAACAGCCAGTATGAGAGAATTTTAGATTCTTCCACTCCTGAAGGAAA 482
BSNT_01013___ 489 ACGGCTAAATGCCATGCTCAGCAAAATTGCTGACGGACTTCAAGAGCTGG 538
.|||||..|.||.|||||.||||||||.||.|||||.||.||.|||||.|
BL05063___ydh 483 GCGGCTTGAGGCGATGCTGAGCAAAATCGCGGACGGCCTCCAGGAGCTTG 532
BSNT_01013___ 539 AGAACCAAGGTGTGCCTGTTCTGTTCAGGCCGCTGCATGAAATGAACGGC 588
|.||..||||.|||||.|||||.|||||.||.||.||.||||||||||||
BL05063___ydh 533 AAAATGAAGGCGTGCCCGTTCTATTCAGACCCCTTCACGAAATGAACGGC 582
BSNT_01013___ 589 GAATGGTTTTGGTGGGGACTTACATCATATAACCAAAAGGATAATGAAAG 638
||||||||.||||||||.||.||...||||||.|||||.||.|..|||||
BL05063___ydh 583 GAATGGTTCTGGTGGGGGCTGACGCAATATAATCAAAAAGACAGCGAAAG 632
BSNT_01013___ 639 AATCTCTCTATATAAACAGCTCTACAAGAAAATCTATCATTATATGACCG 688
||||||..|.||.|||||||||||...||||||||||.|.||||||||..
BL05063___ydh 633 AATCTCCTTGTACAAACAGCTCTATGTGAAAATCTATGACTATATGACAA 682
BSNT_01013___ 689 ACACAAGAGGACTTGATCATTTGATTTGGGTTTACTCTCCCGACGCCAAC 738
|.||||||||.||.||||||.|..|.|||||.||..|.||.|||||||||
BL05063___ydh 683 AAACAAGAGGCCTGGATCATCTCTTGTGGGTGTATGCGCCGGACGCCAAC 732
BSNT_01013___ 739 CGAGATTTTAAAACTGATTTTTACCCGGGCGCGTCTTACGTGGATATTGT 788
.||||.||||||||.||.|||||.||||||||.||.||.|||||.|||||
BL05063___ydh 733 AGAGACTTTAAAACGGACTTTTATCCGGGCGCATCATATGTGGACATTGT 782
BSNT_01013___ 789 CGGATTAGATGCGTATTTTCAAGATGCCTACTCGATCAATGGATACGATC 838
|||..|.||.||.||||||.|.||..|.|||.|.||..||||.|||||..
BL05063___ydh 783 CGGGCTTGACGCTTATTTTGATGACCCGTACGCCATTGATGGCTACGAAG 832
BSNT_01013___ 839 AGCTAACAGCGCTTAATAAACCATTTGCTTTTACAGAAGTCGGCCCGCAA 888
||||.|||.||||.||.||.||.|||||.||||||||||||||.|||||.
BL05063___ydh 833 AGCTCACATCGCTGAACAAGCCGTTTGCCTTTACAGAAGTCGGACCGCAG 882
BSNT_01013___ 889 ACAGCAAACGGCAGCTTCGATTACAGC-CTGTTCATCAATGCTGTAAAAC 937
||..||||||||.|..|.|||||| || |.|||.|||.||||..|.|||.
BL05063___ydh 883 ACGACAAACGGCGGGCTGGATTAC-GCGCGGTTTATCCATGCCATCAAAG 931
BSNT_01013___ 938 AAAAATATCCTAAAACCATTTACTTTCTGGCATGGAATGATGAATGGAGC 987
|||||||.||.|||||.|..|||||.|||||.|||||.|||||.||||||
BL05063___ydh 932 AAAAATACCCGAAAACGACGTACTTCCTGGCGTGGAACGATGAGTGGAGC 981
BSNT_01013___ 988 CCAGCTGTAAACAAGGGTGCTTCGG-----CTTTAT-ATCATGACAGCTG 1031
||.|||||.||.|||||.| ||| ||.||| .|||| .|| ||
BL05063___ydh 982 CCGGCTGTGAATAAGGGAG---CGGACACCCTCTATCTTCAT-CCA--TG 1025
BSNT_01013___ 1032 GACACTCAATAAGGGAGAAATATGGAACGGCGATTCTTTAACGCCAATCG 1081
|||.||.|||||.|||||.||||||.|||||||||||||.|||||..|||
BL05063___ydh 1026 GACGCTGAATAAAGGAGAGATATGGGACGGCGATTCTTTGACGCCTGTCG 1075
BSNT_01013___ 1082 TTGAATGA 1089
|.||||.|
BL05063___ydh 1076 TGGAATAA 1083
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