Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01127 and BL05061

See Amino acid alignment / Visit BSNT_01127 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:39
# Commandline: needle
#    -asequence dna-align/BSNT_01127___yerC.1.5803.seq
#    -bsequence dna-align/BL05061___yerC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01127___yerC-BL05061___yerC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01127___yerC-BL05061___yerC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01127___yerC
# 2: BL05061___yerC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 315
# Identity:     244/315 (77.5%)
# Similarity:   244/315 (77.5%)
# Gaps:           3/315 ( 1.0%)
# Score: 937.0
# 
#
#=======================================

BSNT_01127___      1 ATGCAAATCGATAAATTACGCGGCAAAGAGCTGGACCAGTTATTTAACTC     50
                     |||||.|||||||||||.|||||.|.|||||||||||||.|.|||.|.||
BL05061___yer      1 ATGCAGATCGATAAATTGCGCGGGAGAGAGCTGGACCAGCTTTTTCAATC     50

BSNT_01127___     51 GATCTTATCGCTGAAAGACCTGGAGGAATGTTACCGATTCTTCGATGATC    100
                     .||..||||.||.|||||.||.||.|||||.||.||.||.|||||||||.
BL05061___yer     51 CATACTATCACTAAAAGATCTCGAAGAATGCTATCGTTTTTTCGATGATT    100

BSNT_01127___    101 TATGCACAATTAACGAAATTCAATCGCTGGCTCAGCGCCTTGAAGTGGCG    150
                     ||||||||||.||.|||||||||||..||||||||||.||.|||||.||.
BL05061___yer    101 TATGCACAATAAATGAAATTCAATCATTGGCTCAGCGGCTCGAAGTAGCC    150

BSNT_01127___    151 CGCATGCTTCGCGAAGGAAACACGTATCATAAGATTGAAACAGAAACAGG    200
                     .|.|||||.|||||.||.||||||||||||||.|||||.||.|||||.||
BL05061___yer    151 AGAATGCTGCGCGACGGCAACACGTATCATAAAATTGAGACGGAAACCGG    200

BSNT_01127___    201 CGCTTCCACGGCTACGATTTCCCGTGTGAAACGCTGCTTAAATTACGGGA    250
                     .||...|||.||.||.||||||.|.||.||.||||||.|.||.|||||.|
BL05061___yer    201 AGCGAGCACCGCGACCATTTCCAGGGTAAAGCGCTGCCTGAACTACGGAA    250

BSNT_01127___    251 ATGACGCTTATGAAATGGCGCTTGACCGTGTGAAGGAGAATGAAACAGAG    300
                     |||||||||||...||||||||.|||||.||.||.|..|||.||.|.||.
BL05061___yer    251 ATGACGCTTATATCATGGCGCTGGACCGCGTCAAAGCAAATCAATCTGAA    300

BSNT_01127___    301 TCTTCTTCCAAATAA    315
                     ||.|||||   ||.|
BL05061___yer    301 TCATCTTC---ATGA    312


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.