Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01045 and BL05051

See Amino acid alignment / Visit BSNT_01045 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:34
# Commandline: needle
#    -asequence dna-align/BSNT_01045___ydiL.1.5803.seq
#    -bsequence dna-align/BL05051___ydiL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01045___ydiL-BL05051___ydiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01045___ydiL-BL05051___ydiL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01045___ydiL
# 2: BL05051___ydiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity:     517/778 (66.5%)
# Similarity:   517/778 (66.5%)
# Gaps:          86/778 (11.1%)
# Score: 1519.0
# 
#
#=======================================

BSNT_01045___      1 TTGAGAAAACAGTATTGGTTTATTATTTTGACATATATCATCATGCAGTT     50
                     |||||||||||.||.|||||||||||.|||.||||..|..|||||||.||
BL05051___ydi      1 TTGAGAAAACAATACTGGTTTATTATATTGGCATACGTTCTCATGCAATT     50

BSNT_01045___     51 TTCCGCATTAATCGCGATTCCCT----TGTTATTTAAATTCGGTTATGCC     96
                     .||.||..|..||| |.||.|||    |.|..|||   ||.||....|.|
BL05051___ydi     51 GTCGGCGGTTGTCG-GCTTGCCTCTTCTCTACTTT---TTGGGAGTGGGC     96

BSNT_01045___     97 GGAGGACAGCCTACAGATGAAAAT-ATGTTGCATGCACAAGGATTATGGT    145
                     .||||||||||.|..|.||||..| |..||.|||..|| .||..|.||||
BL05051___ydi     97 AGAGGACAGCCCAAGGCTGAAGCTCAGCTTACATTGAC-GGGCGTCTGGT    145

BSNT_01045___    146 CCGTTATCAGC-TTTATCGCCTGTCTCGTTGTTGTTCTGCTCATTCTGAG    194
                     |.||.||| || ||||.|..|||||||||..|.||.|||||.|||.||.|
BL05051___ydi    146 CTGTCATC-GCGTTTACCCTCTGTCTCGTCATCGTGCTGCTGATTTTGCG    194

BSNT_01045___    195 AACCGTTCCGAAAGA-AACGCTGCG-AAACGGACAGAAG-----------    231
                     .||.||.||| |||| .|||||.|| ||.||..||.|||           
BL05051___ydi    195 GACGGTGCCG-AAGACGACGCTTCGCAATCGTCCAAAAGCATCGGTTGCA    243

BSNT_01045___    232 GACTCAATCGGACTTTCTATCCTTTGGGCGATAGCCGG-TTTTTTCATTG    280
                     |..|||||||||            ||||||.||||||| .|||||| |.|
BL05051___ydi    244 GCGTCAATCGGA------------TGGGCGGTAGCCGGCGTTTTTC-TCG    280

BSNT_01045___    281 CCCTTTTCTCTCAAGGAATAGCAGGCTCTATTGAATATTATGTTTTTGGC    330
                     |..|.||..|.||...|||.||.|..||.||.|||    |||...|||  
BL05051___ydi    281 CTTTGTTTGCGCAGTCAATTGCCGCTTCGATCGAA----ATGAACTTG--    324

BSNT_01045___    331 ATCGG----AA---GAGAATCAGAAAATACACAAGC-GATTCTGGATGTC    372
                     .||||    ||   | |||||.|||||||..| ||| ||||.||.|..||
BL05051___ydi    325 TTCGGGGTCAACCCG-GAATCCGAAAATATGC-AGCGGATTATGAAAATC    372

BSNT_01045___    373 ATTCA-GGCAGTCCCGCTCATGATTATCGTTTCTTCCATCGTCGGGCCTA    421
                     | ||| .|||.|.|||||.|||.|..|.||.|||||..|..||||.||.|
BL05051___ydi    373 A-TCACCGCATTGCCGCTGATGGTGTTTGTCTCTTCTGTATTCGGTCCGA    421

BSNT_01045___    422 TATTAGAAGAAATCATCTTCAGAAAAATCATTTTCGGCGCGCTGTACGAA    471
                     |..|.|||||||||||.||||||||.|||||||||||.|||.|.||.||.
BL05051___ydi    422 TTCTTGAAGAAATCATTTTCAGAAAGATCATTTTCGGTGCGATCTATGAG    471

BSNT_01045___    472 AAAACGAATTTCTTTTTCGCAGGACTGATCAGCTCGGTTATCT--TCGGT    519
                     |||||||||||.||..|.||.|..|||.||||.|||||..|||  |||| 
BL05051___ydi    472 AAAACGAATTTTTTCGTTGCCGCTCTGTTCAGTTCGGTGCTCTTCTCGG-    520

BSNT_01045___    520 ATTGTTCACGCTGATTTGAAGCATCTCCTTCTATATACAGCAATGGGCTT    569
                      |.||.||....|||||.|..|||||.||..|.|||||.||||||||.||
BL05051___ydi    521 -TCGTCCATTTGGATTTCAGCCATCTGCTCATTTATACGGCAATGGGATT    569

BSNT_01045___    570 TACCTTTGCCTTTTTATATGCGAGAACAAAACGGA-TATGGGTGCCGATT    618
                     .||.||.|||||||||||||..||.||.||.|||| ||| .||.||||||
BL05051___ydi    570 CACATTCGCCTTTTTATATGTCAGGACCAACCGGATTAT-CGTCCCGATT    618

BSNT_01045___    619 TTCGCCCATTTAATGATGAATACATTCGTCGTCATCATGCAG------CT    662
                     |||||||||.|....||||||||..||||||||.|..|||||      |.
BL05051___ydi    619 TTCGCCCATGTCGCCATGAATACGCTCGTCGTCTTGCTGCAGACATTCCG    668

BSNT_01045___    663 TGAGCCTGTTCGTA-ATTACCTTGAACAGC----AGAGCACACAAATGCA    707
                     .||||||.|| |.| |.|| .|||||.|.|    |||      |||||||
BL05051___ydi    669 GGAGCCTATT-GAAGAATA-TTTGAAAAACGTCGAGA------AAATGCA    710

BSNT_01045___    708 ATTGATTATTGGAGGATTATTTTTATGA    735
                     |.|||||||||||||   ||||.|||||
BL05051___ydi    711 AATGATTATTGGAGG---ATTTCTATGA    735


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01045 and BL05051

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
