Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00887 and BL05044

See Amino acid alignment / Visit BSNT_00887 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:27
# Commandline: needle
#    -asequence dna-align/BSNT_00887.1.5803.seq
#    -bsequence dna-align/BL05044.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00887-BL05044.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00887-BL05044.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: BL05044
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 885
# Identity:     800/885 (90.4%)
# Similarity:   800/885 (90.4%)
# Gaps:          21/885 ( 2.4%)
# Score: 3744.0
# 
#
#=======================================

BSNT_00887         1 ATGAAAAATACCCTGTTAGGTTCTATATATTTAGCTTTAGCCGCTAGTAT     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BL05044            1 ATGAAAAATACCCTGTTAGGTTCTATATATTTAGCTTTAGCCGCTAGTAT     50

BSNT_00887        51 CTGGGGTGGCATGTATGTTGTGGTTAAGGTTGTTGTCGCAGTAATTCCGC    100
                     ||||||.|||||||||||.|||||||||||||||||||||||||||||||
BL05044           51 CTGGGGCGGCATGTATGTAGTGGTTAAGGTTGTTGTCGCAGTAATTCCGC    100

BSNT_00887       101 CTTTTGAATTGGTTTGGATCAGGTATGTCATCGCCATCCTTGCGCTTCTT    150
                     ||.||||||||||||||||.|||||.||.||||||||||||.|.||||||
BL05044          101 CTATTGAATTGGTTTGGATTAGGTACGTAATCGCCATCCTTACACTTCTT    150

BSNT_00887       151 ATTGTTGGTTTGATAAGGAAACAATCTTGGAAAATTCATAAGCGCGACCT    200
                     ||.||||||||.||||.||.|||||||||||||||||||||.||.|||||
BL05044          151 ATCGTTGGTTTAATAAAGAGACAATCTTGGAAAATTCATAAACGTGACCT    200

BSNT_00887       201 TTTATTAATTGTTGCCATTGGAATTGTTGGCAACACCATTTCAATTGTTA    250
                     ||||||||||||||.|||||||||.|||||||||||.|||||||||||||
BL05044          201 TTTATTAATTGTTGTCATTGGAATAGTTGGCAACACAATTTCAATTGTTA    250

BSNT_00887       251 CACAAGAATATGGAACGATGTTGTCTTCAGCACAAATGGGAGCAATTATT    300
                     |.||||||||||||||||||||.|||||||||||||||||.||.||||||
BL05044          251 CGCAAGAATATGGAACGATGTTATCTTCAGCACAAATGGGGGCGATTATT    300

BSNT_00887       301 ACGTCCTCCACACCAGCGTTCATGGTTATTTTTGCTCGTCTATTACTTAA    350
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
BL05044          301 ACGTCTTCCACACCAGCGTTCATGGTTATTTTTGCTCGTCTATTACTTAA    350

BSNT_00887       351 AGAACCATTGAATATAAAAAAAGGAACTTCAATAATTTTAGCGACCACAG    400
                     |||||||||||||||||||||||||||.|||||.|||||||||||.|.||
BL05044          351 AGAACCATTGAATATAAAAAAAGGAACCTCAATTATTTTAGCGACTATAG    400

BSNT_00887       401 GCGTATTATTTATTGTTGGAAACGGACATATTGATACCTCTAATCAGCTT    450
                     |||||||||||||||||||||||||.|||||||||||.|||||||||.||
BL05044          401 GCGTATTATTTATTGTTGGAAACGGTCATATTGATACTTCTAATCAGATT    450

BSNT_00887       451 GGCGGTATTTCTCTGCTTGTTGCAGCCCTTACATGGGCACTGATGTCAGT    500
                     ||.||||||||||||||||.||||||.|||||||||||.||.||||||||
BL05044          451 GGTGGTATTTCTCTGCTTGCTGCAGCACTTACATGGGCGCTAATGTCAGT    500

BSNT_00887       501 GCTTATCAAACGCGTGCCAAACAGCTATTCGCCTATACTTGTTACCACGT    550
                     |||||||||||.||||||.||||||||||||.||.|||||||.||.||||
BL05044          501 GCTTATCAAACTCGTGCCCAACAGCTATTCGTCTTTACTTGTGACAACGT    550

BSNT_00887       551 ATTCAACTTTTGTGGCCATTGTGGCACTAACTCCTTTTGTAAAACCTAGC    600
                     |||||||||||||.||||||||||||||||||||||||||||||||||.|
BL05044          551 ATTCAACTTTTGTTGCCATTGTGGCACTAACTCCTTTTGTAAAACCTACC    600

BSNT_00887       601 ACGATTTTTACGCCACTACTGCTTGACCCTAAAATTCTAGGTGGTCTTTT    650
                     .|.|||||.|||.|||.|||||||||||||||||||||||||||||||||
BL05044          601 GCAATTTTCACGTCACAACTGCTTGACCCTAAAATTCTAGGTGGTCTTTT    650

BSNT_00887       651 GTATTTGGGAATTGTTTCAACCGCTTGTGCTTTTTTATTGTGGAACCGCG    700
                     ||||||.||||||||||||||.|||||||||||||||||.||||||||.|
BL05044          651 GTATTTAGGAATTGTTTCAACAGCTTGTGCTTTTTTATTATGGAACCGTG    700

BSNT_00887       701 GCTTACAATTATTAAATGCCTCAAGTGGAGGCCTCTTTTTCTTTTTTCAG    750
                     |.||.||||||||||||||.|||||||||||.||||||||||||||||||
BL05044          701 GATTGCAATTATTAAATGCTTCAAGTGGAGGTCTCTTTTTCTTTTTTCAG    750

BSNT_00887       751 CCTCTGGTTGGAACCTTACTCGGATGGATTCTGCTTGGAGAACAAATAGG    800
                     |||||.||||||||||||||.||||||.|||||||.||||||.|||||||
BL05044          751 CCTCTAGTTGGAACCTTACTTGGATGGCTTCTGCTGGGAGAAAAAATAGG    800

BSNT_00887       801 CGGGACATTTTGGATAGGTTCGTTTTTAATTCTTAGCGGTGTTTTATTAG    850
                     |||||||||||||||||||||||||||||||||||..|||||||||||||
BL05044          801 CGGGACATTTTGGATAGGTTCGTTTTTAATTCTTATTGGTGTTTTATTAG    850

BSNT_00887       851 TCATTAAAGAGTAA---------------------    864
                     |.|||||||||.||                     
BL05044          851 TTATTAAAGAGAAAGAAAAAGACGTTAATTCATAA    885


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.