Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00449 and BL05022

See Amino acid alignment / Visit BSNT_00449 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:05
# Commandline: needle
#    -asequence dna-align/BSNT_00449___yczA.1.5803.seq
#    -bsequence dna-align/BL05022___rtpA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00449___yczA-BL05022___rtpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00449___yczA-BL05022___rtpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00449___yczA
# 2: BL05022___rtpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 179
# Identity:     110/179 (61.5%)
# Similarity:   110/179 (61.5%)
# Gaps:          34/179 (19.0%)
# Score: 300.0
# 
#
#=======================================

BSNT_00449___      1 ATGGTCATTGCAACTGATGATCTTGAGGTCG-CATGTCCTAAATG---TG     46
                     |||||.||||||||.||.||| |||....|| |||||||.||.||   ||
BL05022___rtp      1 ATGGTGATTGCAACGGACGAT-TTGGAAACGACATGTCCAAATTGCAATG     49

BSNT_00449___     47 AAAGAGCGGGAGAAATCGAA-----GGAACACCTTGCCCGGCCTGCAGCG     91
                     .|  |||||.|||    |||     |||  .|||||.||....||....|
BL05022___rtp     50 GA--AGCGGAAGA----GAAGAGCCGGA--GCCTTGTCCAAAATGTTCGG     91

BSNT_00449___     92 GAAAAGGTGTTATTCTGACTGCTCA----AGGATATACGCTTCTGGATTT    137
                     |||||||.||.|||.||||.||.||    ||.|.||    |.||..||||
BL05022___rtp     92 GAAAAGGCGTGATTTTGACGGCGCAGGGCAGCACAT----TGCTCCATTT    137

BSNT_00449___    138 TATCCAAAAGCATTT----GAATAAGTAA    162
                     |||..||||.|||.|    ||||||    
BL05022___rtp    138 TATAAAAAAACATCTCAACGAATAA----    162


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