Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00259 and BL05017
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_00259___ybaJ.1.5803.seq
# -bsequence dna-align/BL05017.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00259___ybaJ-BL05017.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00259___ybaJ-BL05017.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00259___ybaJ
# 2: BL05017
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 421/1007 (41.8%)
# Similarity: 421/1007 (41.8%)
# Gaps: 472/1007 (46.9%)
# Score: 674.0
#
#
#=======================================
BSNT_00259___ 1 ATGAATGCGTTAGTAGCTCATAATAGCAAAGCCTGGGATAAAAAA----- 45
|| ||.||||||
BL05017 1 ----------------------AT------------GAGAAAAAACGCTG 16
BSNT_00259___ 46 -----GTAGAA-ACAGGCAATGAATGGA--CTGTT--------GCTGTTG 79
|.|||| .||..|||.| ||||| |.||| |||.|
BL05017 17 CCACTGAAGAAGCCATTCAAAG-ATGGAACCGGTTTGCAGATAGCTAT-- 63
BSNT_00259___ 80 AGCAGCAGGTGATC------GAACAAG--------CA-AAAAAAGGCAAT 114
||.||| |.| ||||||| || |||.|||.|..|
BL05017 64 -GCTGCA----AACCATACTGAACAAGGCGATATACATAAAGAAGTCTTT 108
BSNT_00259___ 115 TGGGA---------------------TATAAGGGTAACACCAATGAAA-- 141
|.|.| |..||.|||.|.| |||.|||
BL05017 109 TTGAACCCCGTCATCTTTTCTCTCATTGAAACGGTGAAA--AATCAAAAA 156
BSNT_00259___ 142 ------GATGTACC---------GAAGGAT------------TGGTTTCC 164
|||| || ||||||| ||.|..||
BL05017 157 GTGCTGGATG--CCGGGTGCGGAGAAGGATATTTAAGCAGAATGCTGGCC 204
BSNT_00259___ 165 GCC-----------TGTCAAA----GGTCTGA---------AAGTACTCT 190
||| ||| || ||| ||| |||.| |
BL05017 205 GCCCGCGAAGCAGTTGT--AACGGCGGT-TGACTATTCGACAAGAA---T 248
BSNT_00259___ 191 G-TTTAGCATC----AGG------CGGCGGCCAGCAGGGCCCAGTT---- 225
| ||.|| ||| ||| ||.|||.| |.|..||.|| ||
BL05017 249 GCTTGAG-ATCGCCAAGGAAAGAACGCCGGAC-GGATTGCACA-TTCATT 295
BSNT_00259___ 226 -TTGGCAGCCGCA--GGCGCGGATGTCACCGTAC------TAGATAACTC 266
|.|||| |.||| .|.|.||| |.|.| |||||
BL05017 296 ATCGGCA-CGGCAATTGTGAGGA------CTTGCATTTTTTAGAT----- 333
BSNT_00259___ 267 AGAAAAACAGC--TGA-ATCAGGATA--AAATGATTGCTGAGCGAGATGG 311
||..|| ||| ||| ||||..||| .||| ||||
BL05017 334 -GAGCAA-AGCTTTGATATCATCATATCGAAT--------------ATGG 367
BSNT_00259___ 312 TC-TCACAATACACACTGTCAAAGG------AAGC----------ATGGA 344
|| || |||.|| ||..||||.| |||| |||.|
BL05017 368 TCATC-CAAGAC---CTCGCAAATGATGAAAAAGCGTTTCAGGAAATGCA 413
BSNT_00259___ 345 CGATTTAAGTGTATTTAATGATGAA-------TCATTTGATGTC-ATTGT 386
| ||..||||.||.||||.| |.|||| |.|| ||..|
BL05017 414 C------AGGTTATTAAAAGATGGAGGATGCTTTATTT--TTTCAATATT 455
BSNT_00259___ 387 ACATCCTGTTGCCAATGTTTTTGTTGAGAATGTCCTCCCGGTA--TGGAA 434
|||.||| ||||| .|||..|||||.| .|||.
BL05017 456 ACACCCT--------TGTTT----------CGTCACCCCGGAAAGCGGAT 487
BSNT_00259___ 435 GGAAGCGCACCGTGTGTTGAAAAGGAACGGC-----GTTCTAATCTCGG- 478
||.|..|.||| |||| ||||| |.||.| |.||
BL05017 488 GGGAAAGAACC---------AAAG--ACGGCCAAAAGCTCCA---TTGGA 523
BSNT_00259___ 479 --GTTTTGTCAATCCTGTTGTATTTCTGTTTGATACAGA------ATTAG 520
||| .||| .|||||| .||| || ||..|
BL05017 524 ACGTT-----GATC----GGTATTT-------TTAC-GAAGGCGCATATG 556
BSNT_00259___ 521 AACAGC-------------------AAGGT---GTTTTAAAAGTAAAACA 548
|.|||| ||.|| .||||.|.|| ||||
BL05017 557 AGCAGCCGCTGGGCGGCGAGGAGAAAATGTTTCTTTTTCACAG---AACA 603
BSNT_00259___ 549 CT------CCAT-TCCATACGCTGACC----------------CAGAAGA 575
|| |.|| ||.|||||.|.|.| .|||||
BL05017 604 CTGACAAGCTATATCAATACGATCATCAAAGCCGGCTTTCAATTAGAAG- 652
BSNT_00259___ 576 TCTTCCGA--AAC--ATAAAGTGAAAAAA----CTGATCGAAAATAATGA 617
|...||| ||| |.|..||.||||.| |||| .||||||
BL05017 653 -CGGTCGAGGAACCGAGACCGTCAAAAGAGATGCTGA--AAAAATA---- 695
BSNT_00259___ 618 GGCTTTGGAATTCGGCCATTCCTTAGAAGACCAAATCAAAGGCCAAATTG 667
||.|||.||.||||| |.|||..|||
BL05017 696 ---------------CCCTTCATTTGAAGA--AGATCTCAGG-------- 720
BSNT_00259___ 668 ATG--CCGGTTTTATCGTTACTGGTTTTTATGAAGATAAA----GGCGGG 711
|| |||.|||.|||||| |||..||.||| ||| |||||.
BL05017 721 -TGCCCCGATTTCATCGTT-----TTTAAATTAAG--AAAGCCCGGCGGC 762
BSNT_00259___ 712 TTTGTATTAGACCAATATATCCATACATATTCTGCAACAAGAAGCGTGAA 761
..||| ||.|||.
BL05017 763 GATGT------CCGATAG-------------------------------- 774
BSNT_00259___ 762 AGTATGA 768
BL05017 774 ------- 774
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