Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00200 and BL05007

See Amino acid alignment / Visit BSNT_00200 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00200___nusG.1.5803.seq
#    -bsequence dna-align/BL05007___nusG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00200___nusG-BL05007___nusG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00200___nusG-BL05007___nusG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00200___nusG
# 2: BL05007___nusG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 534
# Identity:     433/534 (81.1%)
# Similarity:   433/534 (81.1%)
# Gaps:           0/534 ( 0.0%)
# Score: 1761.0
# 
#
#=======================================

BSNT_00200___      1 ATGGAAAAGAATTGGTATGTTGTTCACACGTACTCTGGTTATGAGAATAA     50
                     |||||||||||.||||||||.|||||.||||||||.||.|||||.|||||
BL05007___nus      1 ATGGAAAAGAAATGGTATGTGGTTCATACGTACTCCGGCTATGAAAATAA     50

BSNT_00200___     51 AGTAAAAGCCAACTTGGAAAAACGTGTTGAATCAATGGGGATGCAGGATA    100
                     ||||||.||.||.||||||||.||.||.|||||.|||||||||||.||||
BL05007___nus     51 AGTAAAGGCGAATTTGGAAAAGCGGGTAGAATCGATGGGGATGCAAGATA    100

BSNT_00200___    101 AAATTTTCCGTGTAGTCGTACCCGAAGAAGAAGAAACGGATATCAAAAAC    150
                     |.||.|||||.||.||.|||||.|||||.||||||||.|||||.||||||
BL05007___nus    101 AGATATTCCGCGTCGTTGTACCTGAAGAGGAAGAAACCGATATTAAAAAC    150

BSNT_00200___    151 GGCAAGAAAAAAGTCGTGAAAAAGAAAGTGTTCCCTGGTTATGTGCTTGT    200
                     |||||||||||||||||.|||||||||||.||||||||||||||.|||||
BL05007___nus    151 GGCAAGAAAAAAGTCGTTAAAAAGAAAGTCTTCCCTGGTTATGTACTTGT    200

BSNT_00200___    201 TGAAATTGTAATGACAGACGACTCTTGGTATGTTGTCCGAAACACGCCGG    250
                     .|||.||||.|||||.||.||.||.|||||||||||.|||||.|||||.|
BL05007___nus    201 CGAACTTGTCATGACGGATGATTCCTGGTATGTTGTTCGAAATACGCCTG    250

BSNT_00200___    251 GCGTTACTGGATTCGTAGGATCTGCCGGGTCAGGTTCAAAACCGACGCCG    300
                     |.||.||.||.||.||.||.||.|||||.|||||||||||.|||||..|.
BL05007___nus    251 GTGTGACCGGGTTTGTCGGTTCAGCCGGATCAGGTTCAAAGCCGACTGCA    300

BSNT_00200___    301 CTTCTTCCGGGCGAAGCAGAAACCATTCTGAAGAGAATGGGCATGGATGA    350
                     ||.||||||||||||||.||||..||.||||||.|.|||||..|.||.||
BL05007___nus    301 CTGCTTCCGGGCGAAGCGGAAAAAATCCTGAAGCGGATGGGGCTTGAAGA    350

BSNT_00200___    351 ACGCAAAACTGATATTGACTTTGAACTGAAAGAGACAGTGAAAGTAATAG    400
                     |.|.|||||.||.||.|||||||||.|.|||||.||.||.||.||.||.|
BL05007___nus    351 AAGAAAAACAGAAATCGACTTTGAATTAAAAGAAACCGTCAAGGTTATCG    400

BSNT_00200___    401 ACGGACCTTTTGCTAACTTTACAGGATCAATTGAAGAGATTGATTATGAT    450
                     ||||.||.||||||.|.||.|||||..|.||.||||||||.||..|.||.
BL05007___nus    401 ACGGCCCGTTTGCTGATTTCACAGGGACGATCGAAGAGATCGACCACGAC    450

BSNT_00200___    451 AAAAGCAAGGTCAAAGTTTTCGTTAATATGTTCGGCCGTGAAACGCCGGT    500
                     ||||..||.|||||||||||.||||||||||||||..|.||.||.|||||
BL05007___nus    451 AAAAATAAAGTCAAAGTTTTTGTTAATATGTTCGGAAGAGAGACCCCGGT    500

BSNT_00200___    501 TGAGCTGGAATTTACCCAAATCGATAAATTGTAA    534
                     ||||||.||||||||.|||.|.||.|||||||||
BL05007___nus    501 TGAGCTCGAATTTACTCAAGTTGACAAATTGTAA    534


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.