Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00120 and BL05003

See Amino acid alignment / Visit BSNT_00120 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:47
# Commandline: needle
#    -asequence dna-align/BSNT_00120___hprT.1.5803.seq
#    -bsequence dna-align/BL05003___hprT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00120___hprT-BL05003___hprT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00120___hprT-BL05003___hprT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00120___hprT
# 2: BL05003___hprT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 557
# Identity:     452/557 (81.1%)
# Similarity:   452/557 (81.1%)
# Gaps:          31/557 ( 5.6%)
# Score: 1912.0
# 
#
#=======================================

BSNT_00120___      1 ATGATGAAACATGATATCGAGAAAGTACTGATCTCAGAGGAAGAGATACA     50
                        ||||||||.|||||.||.||..|..|||||||.||.||||||||.||
BL05003___hpr      1 ---ATGAAACAGGATATTGAAAATATCTTGATCTCGGAAGAAGAGATCCA     47

BSNT_00120___     51 AAAGAAAGTAAAAGAGTTAGGTG---------CAGAATTAACGAGCGAGT     91
                     |||||||||.||.|||.|.||.|         |||||         ||||
BL05003___hpr     48 AAAGAAAGTCAAGGAGCTGGGCGCGACTCTGACAGAA---------GAGT     88

BSNT_00120___     92 A-----TCAAGATACATTTCCGTTGGCAATCGGTGTGTTAAAAGGAGCAC    136
                     |     .||||     ||||||.|||||||||||||||||||||||||..
BL05003___hpr     89 ACAGCGGCAAG-----TTTCCGCTGGCAATCGGTGTGTTAAAAGGAGCCA    133

BSNT_00120___    137 TTCCTTTTATGGCGGATCTTATCAAGCATATTGATACATATTTGGAAATG    186
                     |.||.||||||||.||||||.|.||||||||||||||||||.||||||||
BL05003___hpr    134 TGCCGTTTATGGCTGATCTTTTAAAGCATATTGATACATATCTGGAAATG    183

BSNT_00120___    187 GATTTCATGGATGTATCAAGCTACGGAAATTCTACGGTTTCTTCTGGAGA    236
                     ||||||||||||||||||||||||||.|.|||.|||||||||||.|||||
BL05003___hpr    184 GATTTCATGGATGTATCAAGCTACGGCAGTTCCACGGTTTCTTCCGGAGA    233

BSNT_00120___    237 AGTAAAAATCATTAAAGATTTGGATACATCTGTAGAGGGCCGGGACATCT    286
                     .||.||||||||.||.||||||||.|||||||||||||||||.|||||||
BL05003___hpr    234 GGTGAAAATCATAAAGGATTTGGACACATCTGTAGAGGGCCGTGACATCT    283

BSNT_00120___    287 TAATTATTGAAGATATCATCGACAGTGGGTTAACCTTAAGTTATCTCGTA    336
                     ||||||||||.||||||||||||||||||.|.|||||.||||||||.|||
BL05003___hpr    284 TAATTATTGAGGATATCATCGACAGTGGGCTGACCTTGAGTTATCTTGTA    333

BSNT_00120___    337 GAGCTCTTCCGATACCGTAAAGCAAAATCAATTAAGATTGTTACCCTTTT    386
                     |||||.|||||||||||.|||||||||||.||||||||.||.||||||.|
BL05003___hpr    334 GAGCTTTTCCGATACCGCAAAGCAAAATCGATTAAGATCGTAACCCTTCT    383

BSNT_00120___    387 GGATAAACCGAGCGGAAGAAAAGCGGACATCAAAGCAGACTTTGTCGGTT    436
                     .||||||||.||||||.||||||||||.||||||||.||.|..|||||.|
BL05003___hpr    384 TGATAAACCAAGCGGACGAAAAGCGGATATCAAAGCGGATTACGTCGGCT    433

BSNT_00120___    437 TTGAAGTTCCTGACGCGTTTGTAGTGGGTTACGGACTTGATTATGCTGAG    486
                     ||||||||||.||.||.||.||.||.||.|||||.||.|||||||||||.
BL05003___hpr    434 TTGAAGTTCCCGATGCTTTCGTTGTCGGATACGGTCTCGATTATGCTGAA    483

BSNT_00120___    487 CGCTATCGCAATCTGCCTTATATCGGAGTGTTAAAACCGGCAGTTTATGA    536
                     ||||||||.|||||.||.||.|||||||||.|.|||||.||.||||||||
BL05003___hpr    484 CGCTATCGTAATCTTCCGTACATCGGAGTGCTGAAACCTGCGGTTTATGA    533

BSNT_00120___    537 AAGCTGA    543
                     .||||||
BL05003___hpr    534 GAGCTGA    540


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