Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05585 and BL04039
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05585___ywnE.1.5803.seq
# -bsequence dna-align/BL04039___ywnE.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05585___ywnE-BL04039___ywnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05585___ywnE-BL04039___ywnE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05585___ywnE
# 2: BL04039___ywnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1514
# Identity: 1064/1514 (70.3%)
# Similarity: 1064/1514 (70.3%)
# Gaps: 112/1514 ( 7.4%)
# Score: 3655.0
#
#
#=======================================
BSNT_05585___ 1 ------------------GTGAGTATTTCTTCCATCCTTTTATCACTTT- 31
.|.|||||..|.||.|| .|||.||..|||
BL04039___ywn 1 ATGGATATTATTAAAAATATCAGTATCACATCGAT--ATTTCTCGGTTTT 48
BSNT_05585___ 32 -TTTTCATTTTAAATATTCTTTTGGCCATCATTGTCATCTTCAAAGAACG 80
|.||..|||||||||..||||||||.|||.||||.|||||.|..|||||
BL04039___ywn 49 ATATTAGTTTTAAATACGCTTTTGGCAATCGTTGTGATCTTTAGGGAACG 98
BSNT_05585___ 81 GCGCGATGCCAGTGCATCTTGGGCGTGGCTGCTT-GTTCTTTTCTTTATT 129
.||.|||||.||..|.||.|||||.||||| ||| ||.||.|||||||||
BL04039___ywn 99 CCGGGATGCAAGCTCCTCCTGGGCCTGGCT-CTTGGTGCTCTTCTTTATT 147
BSNT_05585___ 130 CCCGTTTTAGGCTTTAT--TTTATACTTATTATTCGGCCATAATCTCAGA 177
||||||.|.|||||||| ||||| ||..|.||||||||.|||.|.||
BL04039___ywn 148 CCCGTTCTCGGCTTTATCCTTTAT--TTGCTCTTCGGCCACAATTTGAG- 194
BSNT_05585___ 178 CA-CAAGCATTTGTTTCAATGGGAAGACCGGAAAAAGATTGGAATTGAAA 226
|| .||.||..|.|||||||||||||||||.||.|||||.||.|||||||
BL04039___ywn 195 CAGGAATCACCTTTTTCAATGGGAAGACCGAAAGAAGATCGGGATTGAAA 244
BSNT_05585___ 227 GGCTGCTGAAGCATCAGCT--------TGAAGATTTAGAAACCAAGC--- 265
...|..||.|.||.||||| |||| ||||| ||
BL04039___ywn 245 AAATATTGGAACAGCAGCTGACCAAGCTGAA-------AAACC--GCGAG 285
BSNT_05585___ 266 ----AATTTCAGTTCAATAACCGGGCAACCTTTGATAACAAAGATTTAAT 311
|||||| .|||||| .||.||....||.|.||||||.||.||
BL04039___ywn 286 TTTGAATTTC---GCAATAA---AGCGACGGCGGACAGCAAAGACTTGAT 329
BSNT_05585___ 312 TTATATGCTGATTATGAATAACCATGCTGTGTTTACAGAGGATAATTCAG 361
||||||||..|||.||||||||||.||.||.||||||||.||.|||.|.|
BL04039___ywn 330 TTATATGCACATTTTGAATAACCACGCCGTTTTTACAGAAGACAATGCGG 379
BSNT_05585___ 362 TTGACGTCATTACAGATGGACGGGATAAATTTCAGCGGCTGCTGAGTGAC 411
|.||..|..|.||.||.|||||..|.|||||..|..|||||||..|.||.
BL04039___ywn 380 TCGAGCTGTTAACGGACGGACGCCAGAAATTCGACAGGCTGCTTCGCGAT 429
BSNT_05585___ 412 ATTTCAAAGGCTAAGGATCATATCCATTTACAGTATTATATTTATAAAGG 461
|||..|||.||.||.||.|||||.|||.|.||.|||||||||||||||||
BL04039___ywn 430 ATTGAAAACGCCAAAGACCATATTCATCTTCAATATTATATTTATAAAGG 479
BSNT_05585___ 462 CGATGAATTAGGCAAAAAATTGCGGGACGCTCTCATCCAAAAGGCGAAAG 511
||||||..|.||||||||..|.|||||.||.||||||.||||.||.||||
BL04039___ywn 480 CGATGAGATCGGCAAAAAGCTCCGGGATGCGCTCATCAAAAAAGCAAAAG 529
BSNT_05585___ 512 AAGGTGTTCAGGTCAGAGTGCTTTATGATGAACTCGGGTCCAGAACGCTG 561
||||.|||.|.|||.|.||..|.|||||||||.|.||.||.||||..||.
BL04039___ywn 530 AAGGCGTTGAAGTCCGCGTTTTGTATGATGAATTAGGATCAAGAAGCCTC 579
BSNT_05585___ 562 AGAAAAAAGTTTTTTAAAGAGCTTCGCG----AGGCTGGCGGGCATGTGG 607
||.||||..|||||.|||||||| | |.||.||.||...|||.|
BL04039___ywn 580 AGGAAAAGCTTTTTCAAAGAGCT----GAAAAAAGCGGGAGGATTTGTCG 625
BSNT_05585___ 608 AGGTCTTTTTCC-------CTTCAAAGCTCAGGCCGATTAACCTGCGGCT 650
|.|||||||||| |||.|||..| ||.||..||||..|
BL04039___ywn 626 AAGTCTTTTTCCCGTCGCGCTTTAAATTT-------ATCAATTTGCGCAT 668
BSNT_05585___ 651 GAATTACCGGAACCATCGAAAGCTTGTGATCATAGACGGAATGACCGGTT 700
|||||||||.|||||.||.|||||.||.||.||.|||||..|.|.|||.|
BL04039___ywn 669 GAATTACCGCAACCACCGCAAGCTCGTCATTATCGACGGCGTCATCGGCT 718
BSNT_05585___ 701 ATGTCGGAGGCTTTAACGTCGGAGATGAGTATCTAGGGCTTAATCCGAAA 750
||||||||||.|||||.||||||||.||.|||||.||.||.||.|||...
BL04039___ywn 719 ATGTCGGAGGATTTAATGTCGGAGACGAATATCTCGGTCTGAACCCGGCC 768
BSNT_05585___ 751 TTCGGTTATTGGCGGGATACGCATATCCGGCTGCAAGGAACGGCCGTGCA 800
||.||.|||||||||||.|||||..||.|..|..|||||||.||.||.||
BL04039___ywn 769 TTTGGCTATTGGCGGGACACGCACCTCAGAATCAAAGGAACAGCGGTCCA 818
BSNT_05585___ 801 TGCCATCCAAACACGATTCATCCTTGACTGGAACCAAGCTTC---TCATC 847
..|.||.|||||.||.||.|||||.||.|||||.||.||.|| .||||
BL04039___ywn 819 CTCGATTCAAACGCGTTTTATCCTGGATTGGAATCAGGCCTCGCACCATC 868
BSNT_05585___ 848 ACCATACGCTGACATATATTCCAAATCACTTTCCTGATTACGGCCCAAAA 897
||.|.| |.||||||||.|||||.||.||||||||...||.|.|..|.
BL04039___ywn 869 ACGACA---TTACATATATGCCAAACCATTTTCCTGACATCGACTCCCAC 915
BSNT_05585___ 898 GGCAACGTCGGGATGCAGATTGTCACAAGCGGCCCTGATTCGGAATGGGA 947
||.|||.||||.|||||.||.|||||.||||||||.|||||.||||||||
BL04039___ywn 916 GGAAACATCGGCATGCAAATCGTCACCAGCGGCCCCGATTCAGAATGGGA 965
BSNT_05585___ 948 ACAAATTAAAAATGGCTACATCAAAATGATTTCGAAC-GCCAAGCGTTCC 996
.||.||||||||.|||||.||.||||||||.|| ||| ||.|||||.|||
BL04039___ywn 966 GCAGATTAAAAACGGCTATATTAAAATGATATC-AACGGCAAAGCGGTCC 1014
BSNT_05585___ 997 ATTTTGATACAAACACCTTATTTTATCCCAGATGCAAGCCTGCTGGATGC 1046
|||.|.||.||.||.|||||||||||.||.||.|||||||||||.|||||
BL04039___ywn 1015 ATTCTTATTCAGACGCCTTATTTTATACCGGACGCAAGCCTGCTCGATGC 1064
BSNT_05585___ 1047 TTTAAGGATCGCTTGCCTTTCGGGCATTGACGTTAACATTATGATTCCGA 1096
..|.|||||||||||.||.||.|||.|||||||.|..||.||||||||.|
BL04039___ywn 1065 CCTCAGGATCGCTTGTCTGTCCGGCGTTGACGTCAGGATCATGATTCCTA 1114
BSNT_05585___ 1097 ACAAGCCTGATCACGCCTTTGTATACTGGGCAACACT-TTCGTATATCGG 1145
||||.||.||.||..|.|||||.||||||||||| || |||.||.|||||
BL04039___ywn 1115 ACAAACCCGACCATCCGTTTGTGTACTGGGCAAC-CTATTCTTACATCGG 1163
BSNT_05585___ 1146 CGATCTGCTGAAAGCCGGAGCCACTGTCTATATTTACGATAACGGCTTTA 1195
|||.||..|.|||||.||.|||.|.||.|.|||||||||.|||||.||||
BL04039___ywn 1164 CGAACTTTTAAAAGCAGGCGCCTCCGTATTTATTTACGACAACGGTTTTA 1213
BSNT_05585___ 1196 TTCACGCGAAAACCATCGTGGTGGATGACGAAATCGCTTCAGTCGGCACA 1245
|.||.||||||||.||.||.||.|||||.|||||..|.||.||||||||.
BL04039___ywn 1214 TCCATGCGAAAACGATTGTAGTAGATGAGGAAATTTCATCGGTCGGCACG 1263
BSNT_05585___ 1246 GCGAACATTGATGTCCGAAGCTTCAGGCTGAATTTTGAGGTTAATGCATT 1295
||.||.||||||.|.||.|||||||.|||.||||||||.||.||||||||
BL04039___ywn 1264 GCAAATATTGATATGCGCAGCTTCAAGCTCAATTTTGAAGTGAATGCATT 1313
BSNT_05585___ 1296 TATTTACGAT-----ATCACTATTGCTAAAAAACTGGTTTCAACTTTTAA 1340
|.|.||.||| | |||||.|.||..||.||...|.|.|||.|
BL04039___ywn 1314 TTTATATGATGAGGAA-----ATTGCGAGAAGCCTTGTCCTATCATTTGA 1358
BSNT_05585___ 1341 AGAAGATTTGCTAGTATCCAGAAAATTCACCTATGAGGAGTATTT----- 1385
|.|||||.|||.|||.||.||..|..|.||||.||||||.|||||
BL04039___ywn 1359 AAAAGATCTGCAAGTGTCAAGGGAGCTGACCTTTGAGGAATATTTAAACA 1408
BSNT_05585___ 1386 GCAGCGCCCGTTGTGGATTCGAATAAAAGAATCCGTCTCGCGGCTGTTGT 1435
|.||| ...|.|||.||..|.||||||.||.|.|||...|||.|||
BL04039___ywn 1409 GAAGC-----AAATCGATCCGCTTCAAAGAAGCCATTTCGATCCTGCTGT 1453
BSNT_05585___ 1436 CGCCGATCTTATAA 1449
|||||||.|||||.
BL04039___ywn 1454 CGCCGATTTTATAG 1467
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