Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05580 and BL04028
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05580___spoIIQ.1.5803.seq
# -bsequence dna-align/BL04028___spoIIQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05580___spoIIQ-BL04028___spoIIQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05580___spoIIQ-BL04028___spoIIQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05580___spoIIQ
# 2: BL04028___spoIIQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity: 664/921 (72.1%)
# Similarity: 664/921 (72.1%)
# Gaps: 93/921 (10.1%)
# Score: 2389.5
#
#
#=======================================
BSNT_05580___ 1 ATGAGAGAGGAAGAAAAGAA---AACTTCTCAAGTCAAAAAACTTCAGCA 47
||||.||||||||||||||| .|||||..||.|||.|||.||.||.||
BL04028___spo 1 ATGAAAGAGGAAGAAAAGAATCGTACTTCCAAAATCACAAAGCTGCAACA 50
BSNT_05580___ 48 GTTTTTTCGTAAACGCTGGGTGTTCCCTGCAATTTACTTAGTC-AGTGCG 96
.||||||||||||||||||||.||.||.||.||.|| ||.|.| |||||.
BL04028___spo 51 ATTTTTTCGTAAACGCTGGGTATTTCCGGCCATCTA-TTTGACAAGTGCC 99
BSNT_05580___ 97 GCCGTCATTTTAACAGCTGTCCTTTGGTATCAATCAGTATCAAATGATGA 146
|.|||..|.|||||.||.||.||.|||||||||||.|..||.||..|.||
BL04028___spo 100 GTCGTTGTATTAACCGCCGTTCTATGGTATCAATCGGCTTCTAACAACGA 149
BSNT_05580___ 147 GGTAAAGGATCAGTTGGCTGATAACGGC-GGAAACTCCGCATATGACAAC 195
.|||||.||.|||.|.||.||..|.||| .|||| ||.||.|||||.|||
BL04028___spo 150 TGTAAAAGACCAGCTTGCAGACGATGGCAAGAAA-TCAGCCTATGATAAC 198
BSNT_05580___ 196 AACGACGATGCAGTTGAAGTAGGAAAGTCAATGGAAAATGTCGCAATGCC 245
...||.|||||.||.||||||||.||..||.|.|||||||||||||||||
BL04028___spo 199 CGGGATGATGCGGTAGAAGTAGGCAAACCAGTCGAAAATGTCGCAATGCC 248
BSNT_05580___ 246 AGTTGTTGATTCTGAAAACGTTTCTGTTGTGAAAAAGTTCTATGAAACCG 295
.||||.||||||||||||.|||||.||.||.||||||||.|.||||||.|
BL04028___spo 249 GGTTGCTGATTCTGAAAATGTTTCCGTCGTTAAAAAGTTTTTTGAAACTG 298
BSNT_05580___ 296 ATGCCGCAAAAGAAGAGAAAGAAGCAGCACTCGTTACCTATAATAACACG 345
|.||..|.|||||||||||||||||||||||.||.|.|||||||||||||
BL04028___spo 299 ACGCAACTAAAGAAGAGAAAGAAGCAGCACTTGTAAACTATAATAACACG 348
BSNT_05580___ 346 TACAGCCTAAGCAAAGGAATTGACTTAGCTGAGAAAGACGG-AAAAGATT 394
||||||.|.||||||||.||.|||||.|||||||||||||| ||||.|||
BL04028___spo 349 TACAGCATGAGCAAAGGTATCGACTTGGCTGAGAAAGACGGAAAAACATT 398
BSNT_05580___ 395 TCGATGTCTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGAAAAAGAT 444
| |||||.||.||.|||||.|||||||||||..|.|||||||.||||||.
BL04028___spo 399 T-GATGTTTCCGCATCTCTAAGCGGTACGGTCATCAAAGCTGCAAAAGAC 447
BSNT_05580___ 445 CCAGTGCTGGGATATGTTGTGGAAGTAGAACATGCCGACGGTTTATCGAC 494
||.||.|||||.||.|||||.|||||.|||||||..||.||||||||.||
BL04028___spo 448 CCTGTACTGGGCTACGTTGTTGAAGTTGAACATGAAGATGGTTTATCAAC 497
BSNT_05580___ 495 TGTGTATCAATCTCTTTCCGAAGTAAGCGTTGAGCAAGGTGACAAAGTAA 544
|||||||||.||||||||.|||||||||||..|.|||||||||||..|..
BL04028___spo 498 TGTGTATCAGTCTCTTTCTGAAGTAAGCGTCAAACAAGGTGACAAGATTG 547
BSNT_05580___ 545 AACAAAATCAAGTGATCGGAAAATCTGGCAAGAACCTTTACAGTGAAGAC 594
|||||||||||||.|||||||||.|.|||||.||||||||||.||||||.
BL04028___spo 548 AACAAAATCAAGTCATCGGAAAAGCAGGCAAAAACCTTTACAATGAAGAA 597
BSNT_05580___ 595 AGCGGAAACCACGTACACTTTGAAATCCGTAAAGATGGGGTCGCAATGAA 644
.||||||||||.||.||.|||||||||||.|||||.||.||.||..|.||
BL04028___spo 598 GGCGGAAACCATGTGCATTTTGAAATCCGCAAAGACGGTGTTGCGCTAAA 647
BSNT_05580___ 645 TCCGTTAAACTTTATGGACAAACCAGTTTCTTCTATTGAAAAAGC----- 689
.|||.|.|||||.||||||||.||.||.||....|||||||||||
BL04028___spo 648 CCCGCTGAACTTCATGGACAAGCCGGTCTCCAGCATTGAAAAAGCAATGG 697
BSNT_05580___ 690 ----AGCAGCTGCTGAAG---AAAAAGCTGC-CACCC------------- 718
|..|||..|||||| ||.||.|||| ||.||
BL04028___spo 698 AGGAACAAGCGTCTGAAGTGAAAGAACCTGCTCAGCCTTCTGTTGAAGAA 747
BSNT_05580___ 719 AAG----AAACAGAAGAATCAATTCAGCAATCTTCCGAGAAAAAGGACGG 764
||| |||||||||| ||| ||| |||| |
BL04028___spo 748 AAGTCAAAAACAGAAGA--CAA---AGC----------GAAA-------G 775
BSNT_05580___ 765 ATCAACTGA-AAAAGGAACAGAAGAAAAATCCGGTGAGAAAAAGGATGAT 813
||||| | |.|.||||.|||.||.|||.|| ||...|||.|||
BL04028___spo 776 ATCAA---ACAGATGGAAAAGACGACAAAACC------AAGCGGGAAGAT 816
BSNT_05580___ 814 TCAACTGACAAATCTGGTTCCAAAGAAAGCAGCACAACAGAAGACA--CT 861
||..|||| .||.|| ||||| |.||..||.|||..|| ||
BL04028___spo 817 TCGTCTGA------AGGGTC---AGAAA--ATCAAGACGGAACCCAGTCT 855
BSNT_05580___ 862 GA---------ACAGTCTTAA 873
|| .|||||.|||
BL04028___spo 856 GACGATTCAAGCCAGTCATAA 876
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