Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05584 and BL04027
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05584___ywnF.1.5803.seq
# -bsequence dna-align/BL04027___ywnF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05584___ywnF-BL04027___ywnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05584___ywnF-BL04027___ywnF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05584___ywnF
# 2: BL04027___ywnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity: 285/519 (54.9%)
# Similarity: 285/519 (54.9%)
# Gaps: 156/519 (30.1%)
# Score: 696.0
#
#
#=======================================
BSNT_05584___ 1 ------AT-GAACTTTTACAGAGTCGAACAAATGCCGGGGTTCATCAAAA 43
|| ||||.|| ||.|.||||||||||..||.||.|||.
BL04027___ywn 1 ATGGATATGGAACGTT-------TCCATCAAATGCCGGCCTTTATGAAAG 43
BSNT_05584___ 44 CAGAAATGCAAAAAATTCAAAAGGC-CGT----ACAGCCTTTCATGAAAA 88
..|||||| .|.||..|||| || ||| .| |||.|||.|.||.|
BL04027___ywn 44 AGGAAATG-GATAACCTCAA---GCGCGTGGCGGC-GCCGTTCTTAAAGA 88
BSNT_05584___ 89 AAACCGTCATTTACCGTTTTCTTGCTATTCCG------CTTGCTGCATTC 132
|||...|.||||..|.||||.|.||.|||||| ||||||.||||
BL04027___ywn 89 AAAGGCTGATTTTTCTTTTTATCGCGATTCCGCTGCTTCTTGCTTCATT- 137
BSNT_05584___ 133 TCTCTCTTTAATTTAGCTGCTTTT--------------TTAT-------- 160
|.||||..||..|| ||||| ||||
BL04027___ywn 138 ----TGTTTATCTTTCCT-CTTTTTGGGGGCAGGCAGCTTATGGAACCGA 182
BSNT_05584___ 161 TTC-ATGCT-----TCAGCTGACAGGGAGTCCCTGATCAGCGCAG--GCA 202
||| |||.| ||.|||| |.||| .||||| |||
BL04027___ywn 183 TTCAATGATAAAAATCGGCTG---------CGCTG----CCGCAGGTGCA 219
BSNT_05584___ 203 -TATTCGCCCTTTTGGCGGCGCTCGGGCTCGCATTTTTTAAAGAGGCAGG 251
.|||||.|.| ||||| |.||.|.||||
BL04027___ywn 220 GCATTCGGCAT------GGCGC------------TGTTCAGAGAG----- 246
BSNT_05584___ 252 CTATCAGCATAAACAAATCCAAAAAACG----GTTCA--CATC------- 288
||..|||| |||||||| | ||||| .|||
BL04027___ywn 247 ---TCGTCATA-------CCAAAAAA-GAAATGTTCAGCAATCGGTGATG 285
BSNT_05584___ 289 ---TATATGCT-GAACAGGAT-CAAAAAGAGCGAAATCCTTTCAGAAGAG 333
|||||..| |||| |||| ||||.| ||||||.|.|||||.||.||.
BL04027___ywn 286 AAGTATATATTGGAAC-GGATGCAAACA-AGCGAAGTGCTTTCCGATGAA 333
BSNT_05584___ 334 CGGAAAAGCTCCTACGCAC-----GACAAATAAAGGAAGAGCCTTT---T 375
|||||||||..|||||..| |.|||| ||||||||.|| |
BL04027___ywn 334 CGGAAAAGCCGCTACGTTCGGGCGGTCAAA-----GAAGAGCCGTTTACT 378
BSNT_05584___ 376 GCGATGCGGAGTTTTGTTGAATTTTTGACTGAGGAAGA---CAGA---CG 419
|..|||.|.||.|||.|.||||||||.|.|||.||||| |||| ||
BL04027___ywn 379 GTAATGAGAAGCTTTTTGGAATTTTTAAATGAAGAAGAGATCAGAAGGCG 428
BSNT_05584___ 420 CAAAAAAATGTATGAATAA 438
| |...||..|||||.|
BL04027___ywn 429 C---AGGCTGGCTGAATGA 444
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