Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00311 and BL04016

See Amino acid alignment / Visit BSNT_00311 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_00311___feuA.1.5803.seq
#    -bsequence dna-align/BL04016___feuA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00311___feuA-BL04016___feuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00311___feuA-BL04016___feuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00311___feuA
# 2: BL04016___feuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity:     708/990 (71.5%)
# Similarity:   708/990 (71.5%)
# Gaps:          69/990 ( 7.0%)
# Score: 2427.0
# 
#
#=======================================

BSNT_00311___      1 ATGAAAAAGATATC--TCTTACCTTATTAATCTTACTTCTCGCGCTGACG     48
                     ||||.|||.|||||  |.||.|  ||||.||..|.|||||||||||  .|
BL04016___feu      1 ATGAGAAAAATATCAATATTTC--TATTTATTCTCCTTCTCGCGCT--TG     46

BSNT_00311___     49 GCGGCAGC---TTGCGG---CAGCAAAAATGAATCAA--CTGCCAGC-AA     89
                     || |||||   .|||||   |||||||   |||  ||  |||.|.|| |.
BL04016___feu     47 GC-GCAGCGGGATGCGGGAACAGCAAA---GAA--AAGGCTGGCGGCGAT     90

BSNT_00311___     90 GGCAAGCGGCACAGCATCTGAGAAGAAGAAAATTGAATACCTTGATAAAA    139
                     |||||| .|||||||.||.|...||||||..||.||.|||||.|||.|.|
BL04016___feu     91 GGCAAG-AGCACAGCGTCAGCTGAGAAGAGCATCGAGTACCTCGATCATA    139

BSNT_00311___    140 CATA-----TGAAGTAACTGTACCGACAGACAAAATCGCCATTACGGGAA    184
                     ||||     |||||     .|.|||.|.||..||||||.|||||||||||
BL04016___feu    140 CATACAAGGTGAAG-----ATCCCGGCCGAACAAATCGTCATTACGGGAA    184

BSNT_00311___    185 GCGTTGAATCAATGGAAGACGCGAAATTGCTTGACGTTCATCC-GCAAGG    233
                     ||||.|||||.||||||||.||.||..|.||.||.|||||.|| || .||
BL04016___feu    185 GCGTGGAATCGATGGAAGATGCCAAGCTTCTGGATGTTCACCCAGC-CGG    233

BSNT_00311___    234 CGCAATTTCATTCTCCGGCAAATTCCCTGATATGTTCAAAGA-CATCACT    282
                     .||.|||||.||||||||.||.|||||.|||.|||| .|||| |||.|||
BL04016___feu    234 TGCCATTTCCTTCTCCGGAAAGTTCCCGGATCTGTT-TAAGAGCATTACT    282

BSNT_00311___    283 GATAAAGCCAAACCAAC------CGGAGAAAAAATGGAGCCAAATATTGA    326
                     ||      ||||.||||      |||.||||||||||||||.||..|.||
BL04016___feu    283 GA------CAAAGCAACCGCTGTCGGCGAAAAAATGGAGCCGAACCTGGA    326

BSNT_00311___    327 AAAGATTCTTGAAATGAAGCCAGATGTTATCCTTGCTTCAACAAAGTTTC    376
                     .||.||.|||||..||||.||.|||||.|||||.||||||||.||.||||
BL04016___feu    327 GAAAATCCTTGAGCTGAAACCGGATGTCATCCTGGCTTCAACGAAATTTC    376

BSNT_00311___    377 CGGAAAAAACGCTGCAAAAAATCAGCACAGCA--GGCACGACGATCCCAG    424
                     |.||.|||..|.||  |||||.|.|.|.|.||  |..||||||||.||.|
BL04016___feu    377 CTGATAAAGTGGTG--AAAAAACTGGATAACATCGCGACGACGATTCCTG    424

BSNT_00311___    425 TTTCTCATATCTCTTCAAACTGGAAGGAAAACATGATGCTGCTTGCCCAA    474
                     ||||.|||.|.||||||||||||||.||.||..|.|.||||||.||..||
BL04016___feu    425 TTTCCCATGTTTCTTCAAACTGGAAAGACAATTTAAAGCTGCTGGCTGAA    474

BSNT_00311___    475 CTGACCGGAAAAGAGAAAAAAGCAAAGAAAATTATTGCAGACTATGAACA    524
                     |||||.||.|||||..|.|||||.|||.|.||||||.|.||.||||||..
BL04016___feu    475 CTGACAGGCAAAGAAGATAAAGCGAAGCAGATTATTTCGGATTATGAAGC    524

BSNT_00311___    525 GGATCTAAAAGAAACAAAAACAAA-------AATCAACGATAAAGCGAAA    567
                     .||.||.||.|||.|.||||||||       ||  ||||     ||.|||
BL04016___feu    525 CGACCTCAAGGAAGCTAAAACAAAGCTTGAGAA--AACG-----GCAAAA    567

BSNT_00311___    568 GATTCAAAAGCGCTTGTCATTAGAATTAGACAAGGCAACATTTACATTTA    617
                     |||.||||||||||.||..|.|||||.|||.|||||||.||.|..||.||
BL04016___feu    568 GATACAAAAGCGCTCGTTGTCAGAATCAGAAAAGGCAATATCTTTATCTA    617

BSNT_00311___    618 CCCTGAACAGGTGTATTTCAACTCCACACTATACGGTGATTTAGGCCTTA    667
                     .||.|||.|.||.|..|||||.||||||.||||||||||..|.|||.|.|
BL04016___feu    618 TCCGGAAGACGTATTCTTCAATTCCACATTATACGGTGAGCTCGGCTTCA    667

BSNT_00311___    668 AGGCGCCGAACGAAGTAAAAGCTGCAAAAGCGCAAGAGCTGATTTCATTA    717
                     ..||.||.||.|||||.||.||.||||||||.||.|||.||.||||.|||
BL04016___feu    668 CAGCTCCAAAAGAAGTCAAGGCGGCAAAAGCCCAGGAGTTGGTTTCTTTA    717

BSNT_00311___    718 GAAAAATTAAGTGAAATGAACCCGGACCATATTTTCGTCCAATTTTCTGA    767
                     ||||||.|.|||||||||||.||||||.||||.||.||||||||.||.||
BL04016___feu    718 GAAAAACTGAGTGAAATGAATCCGGACTATATGTTTGTCCAATTCTCAGA    767

BSNT_00311___    768 TGATGAAAATGCAGACAAACCTGATGCCTTAAAAGATTTAGAGAAAAATC    817
                     .|||||.|||||.|||||.||..||||..|.||||||.|.||||||||||
BL04016___feu    768 CGATGAGAATGCCGACAATCCGAATGCGCTGAAAGATCTGGAGAAAAATC    817

BSNT_00311___    818 CAATCTGGAAAAGCCTTAAAGCAGTCAAAGAAGATCATGTGTATGTCAAC    867
                     ||||.|||||||||.||...|||||.|||.|.||.|.|||.|.||||||.
BL04016___feu    818 CAATTTGGAAAAGCATTTCTGCAGTGAAAAATGACCGTGTATTTGTCAAT    867

BSNT_00311___    868 TCAGTGGACCCTCTCGCACAAGGCGGCACAGCTTGGAGCAAAGTCCGTTT    917
                     .|.||.|||||.||.||.||.|||||.||.||.||||||||.||....||
BL04016___feu    868 GCTGTAGACCCGCTTGCGCAGGGCGGAACGGCATGGAGCAAGGTTGAATT    917

BSNT_00311___    918 CCTGAAAGCGGCTGCTGAAAAATTGACACAAAACTAA---    954
                     ..|.||.||.||.|||||.||||||.|.||.|||.||   
BL04016___feu    918 TTTAAAGGCTGCAGCTGAGAAATTGGCGCAGAACAAATAG    957


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