Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05589 and BL04012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05589___ywnB.1.5803.seq
# -bsequence dna-align/BL04012___ywnB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05589___ywnB-BL04012___ywnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-BL04012___ywnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: BL04012___ywnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity: 472/668 (70.7%)
# Similarity: 472/668 (70.7%)
# Gaps: 52/668 ( 7.8%)
# Score: 1568.0
#
#
#=======================================
BSNT_05589___ 1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAGATTTT 50
||||||||.||||||||.||.||||||||.||||||||.|.|..||||||
BL04012___ywn 1 ATGAAAATCGGTATTATCGGTGCAAGCGGTAAAGCGGGCAGCATGATTTT 50
BSNT_05589___ 51 GAAAGAAGC----GAAAACAAGAGACCATGAAGTGACAGCCATCGTCAGA 96
.|||||||| || |||||..||.||||||||.||.||.||||||
BL04012___ywn 51 AAAAGAAGCATCAGA----AAGAGGACACGAAGTGACGGCAATTGTCAGA 96
BSNT_05589___ 97 AACGCTTCAAAAGTGCAG-GAGCAG-GACGTAGCGGTTTTGGAGAAAGAT 144
|..||.||||||.|| | ||.||| ||.|.|||.||..|.||.|||||.
BL04012___ywn 97 AGTGCGTCAAAAATG--GCGAACAGCGATGCAGCTGTCATTGAAAAAGAC 144
BSNT_05589___ 145 GTGTTTGAA-CTGACTGTGGAAGACATCAA--GCCTTTCGACGCGGTCGT 191
.| |||.|| |||||.|.||.||||||||| |.| |.||.|..|||||
BL04012___ywn 145 AT-TTTCAACCTGACAGCGGCAGACATCAAAGGAC--TGGATGTTGTCGT 191
BSNT_05589___ 192 AAACGCTTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCAG 241
.||.||.||.||.||.||.||.||.||.||.|||||.|||||||||||.|
BL04012___ywn 192 CAATGCATTCGGCGCGGCCCCAGGGCAGGAGCATCTCCATGTTGAAGCTG 241
BSNT_05589___ 242 GAAGAGCACTCA-TCAGCATTTTAA--AGG-ACGCGAAGCACACAAGATT 287
|||||...||.| |.|.|..||||| ||| .|..||| ||||||||
BL04012___ywn 242 GAAGAAAGCTGATTGAACTGTTTAAGCAGGTTCCTGAA----ACAAGATT 287
BSNT_05589___ 288 GCTTGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGCCAAAACAA 337
..|.||.||.|||||.||.||.|||||.|.|||.|||||.|..|||||||
BL04012___ywn 288 AATCGTCGTAGGCGGTGCAGGCAGCCTTTATGTCGATGAGGAAAAAACAA 337
BSNT_05589___ 338 CCC--GTTTAATGGATACGCCGGAATTTCCGAAAGAATATTTGCCAACTG 385
||| .|.|| .||||||||.||.|||||.||||||||.|||||.||.|
BL04012___ywn 338 CCCAGCTGTA--CGATACGCCTGAGTTTCCTAAAGAATACTTGCCGACGG 385
BSNT_05589___ 386 CATCAAATCAAGGCGAGAACCTGAAAGATTT----GCAGCAGACAGACTC 431
|...||||||.||..|||||||..|.||||| |.||||||..||||.
BL04012___ywn 386 CTAAAAATCAGGGGCAGAACCTTCAGGATTTGAAAGAAGCAGATGGACTG 435
BSNT_05589___ 432 CATTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAGCAGGAA 481
.| .|||||||||.||||.||.||||||||||||.||||.|.|||||
BL04012___ywn 436 AA----ATGGACGTTCATCAGCCCGGCGGCATTTTTTAATCCGGAAGGAA 481
BSNT_05589___ 482 AACGGACTGGCTCTTACCAAAAAGGAAAAGACAATGTCATCGTAAATGCA 531
|.||.||.||.|||||.||||||||..|.||.||..|.|||||||| ||
BL04012___ywn 482 AGCGAACAGGTTCTTATCAAAAAGGTCAGGAAAACTTAATCGTAAA--CA 529
BSNT_05589___ 532 AAAGGCGGC-------AGCTATATCAGCTATGCAGATTATGCCATTGCCG 574
|.|| |||||.||||||||||||||.||.||||||||.|
BL04012___ywn 530 -----CCGCCGGAGAAAGCTACATCAGCTATGCAGACTACGCCATTGCAG 574
BSNT_05589___ 575 TGTTGGACGAGCTTGAACATCCCGAACACAAAAATGAACGCTTCACAGTG 624
||.||||||||..||||.|...|||.||....|||||.||.|||||.||.
BL04012___ywn 575 TGGTGGACGAGGCTGAAAAAGGCGAGCATGTCAATGAGCGTTTCACTGTT 624
BSNT_05589___ 625 GTAAGCGAAGCGGAATAA 642
||..|.|||||..|||||
BL04012___ywn 625 GTCGGAGAAGCTCAATAA 642
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