Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05589 and BL04012

See Amino acid alignment / Visit BSNT_05589 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05589___ywnB.1.5803.seq
#    -bsequence dna-align/BL04012___ywnB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05589___ywnB-BL04012___ywnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05589___ywnB-BL04012___ywnB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05589___ywnB
# 2: BL04012___ywnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity:     472/668 (70.7%)
# Similarity:   472/668 (70.7%)
# Gaps:          52/668 ( 7.8%)
# Score: 1568.0
# 
#
#=======================================

BSNT_05589___      1 ATGAAAATTGGTATTATAGGCGCAAGCGGGAAAGCGGGAAACGAGATTTT     50
                     ||||||||.||||||||.||.||||||||.||||||||.|.|..||||||
BL04012___ywn      1 ATGAAAATCGGTATTATCGGTGCAAGCGGTAAAGCGGGCAGCATGATTTT     50

BSNT_05589___     51 GAAAGAAGC----GAAAACAAGAGACCATGAAGTGACAGCCATCGTCAGA     96
                     .||||||||    ||    |||||..||.||||||||.||.||.||||||
BL04012___ywn     51 AAAAGAAGCATCAGA----AAGAGGACACGAAGTGACGGCAATTGTCAGA     96

BSNT_05589___     97 AACGCTTCAAAAGTGCAG-GAGCAG-GACGTAGCGGTTTTGGAGAAAGAT    144
                     |..||.||||||.||  | ||.||| ||.|.|||.||..|.||.|||||.
BL04012___ywn     97 AGTGCGTCAAAAATG--GCGAACAGCGATGCAGCTGTCATTGAAAAAGAC    144

BSNT_05589___    145 GTGTTTGAA-CTGACTGTGGAAGACATCAA--GCCTTTCGACGCGGTCGT    191
                     .| |||.|| |||||.|.||.|||||||||  |.|  |.||.|..|||||
BL04012___ywn    145 AT-TTTCAACCTGACAGCGGCAGACATCAAAGGAC--TGGATGTTGTCGT    191

BSNT_05589___    192 AAACGCTTTTGGAGCAGCACCCGGCCAAGAACATCTTCATGTTGAAGCAG    241
                     .||.||.||.||.||.||.||.||.||.||.|||||.|||||||||||.|
BL04012___ywn    192 CAATGCATTCGGCGCGGCCCCAGGGCAGGAGCATCTCCATGTTGAAGCTG    241

BSNT_05589___    242 GAAGAGCACTCA-TCAGCATTTTAA--AGG-ACGCGAAGCACACAAGATT    287
                     |||||...||.| |.|.|..|||||  ||| .|..|||    ||||||||
BL04012___ywn    242 GAAGAAAGCTGATTGAACTGTTTAAGCAGGTTCCTGAA----ACAAGATT    287

BSNT_05589___    288 GCTTGTTGTTGGCGGAGCGGGAAGCCTGTTTGTTGATGAAGCCAAAACAA    337
                     ..|.||.||.|||||.||.||.|||||.|.|||.|||||.|..|||||||
BL04012___ywn    288 AATCGTCGTAGGCGGTGCAGGCAGCCTTTATGTCGATGAGGAAAAAACAA    337

BSNT_05589___    338 CCC--GTTTAATGGATACGCCGGAATTTCCGAAAGAATATTTGCCAACTG    385
                     |||  .|.||  .||||||||.||.|||||.||||||||.|||||.||.|
BL04012___ywn    338 CCCAGCTGTA--CGATACGCCTGAGTTTCCTAAAGAATACTTGCCGACGG    385

BSNT_05589___    386 CATCAAATCAAGGCGAGAACCTGAAAGATTT----GCAGCAGACAGACTC    431
                     |...||||||.||..|||||||..|.|||||    |.||||||..||||.
BL04012___ywn    386 CTAAAAATCAGGGGCAGAACCTTCAGGATTTGAAAGAAGCAGATGGACTG    435

BSNT_05589___    432 CATTTCCTGGACGTTCCTCAGTCCTGCGGCATTTTTTGATCCAGCAGGAA    481
                     .|    .|||||||||.||||.||.||||||||||||.||||.|.|||||
BL04012___ywn    436 AA----ATGGACGTTCATCAGCCCGGCGGCATTTTTTAATCCGGAAGGAA    481

BSNT_05589___    482 AACGGACTGGCTCTTACCAAAAAGGAAAAGACAATGTCATCGTAAATGCA    531
                     |.||.||.||.|||||.||||||||..|.||.||..|.||||||||  ||
BL04012___ywn    482 AGCGAACAGGTTCTTATCAAAAAGGTCAGGAAAACTTAATCGTAAA--CA    529

BSNT_05589___    532 AAAGGCGGC-------AGCTATATCAGCTATGCAGATTATGCCATTGCCG    574
                          |.||       |||||.||||||||||||||.||.||||||||.|
BL04012___ywn    530 -----CCGCCGGAGAAAGCTACATCAGCTATGCAGACTACGCCATTGCAG    574

BSNT_05589___    575 TGTTGGACGAGCTTGAACATCCCGAACACAAAAATGAACGCTTCACAGTG    624
                     ||.||||||||..||||.|...|||.||....|||||.||.|||||.||.
BL04012___ywn    575 TGGTGGACGAGGCTGAAAAAGGCGAGCATGTCAATGAGCGTTTCACTGTT    624

BSNT_05589___    625 GTAAGCGAAGCGGAATAA    642
                     ||..|.|||||..|||||
BL04012___ywn    625 GTCGGAGAAGCTCAATAA    642


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