Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05600 and BL04010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05600.1.5803.seq
# -bsequence dna-align/BL04010___ywmF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05600-BL04010___ywmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05600-BL04010___ywmF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05600
# 2: BL04010___ywmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 331/655 (50.5%)
# Similarity: 331/655 (50.5%)
# Gaps: 191/655 (29.2%)
# Score: 974.0
#
#
#=======================================
BSNT_05600 1 ATGAGACAAAACCATCTGCTGGCAGATGGTTTTTTTATATGCAAAAAAAG 50
BL04010___ywm 0 -------------------------------------------------- 0
BSNT_05600 51 GGGAGCATCGGAACGTTTATTTCCGGGGAGAACAGGAAAAATCGCTACAG 100
BL04010___ywm 0 -------------------------------------------------- 0
BSNT_05600 101 CACTGTTTTTTGAACAAAAGCCGTTTTGGGATGCAGATCTGCACGTGAGG 150
BL04010___ywm 0 -------------------------------------------------- 0
BSNT_05600 151 GGGAATTCAATGTTTGGTTTTAATGATATGGTGAAGTTTCTGTGGTCTTT 200
|||||.||..|..|.|||||.||.||.||.||.|||||.||
BL04010___ywm 1 ---------ATGTTCGGACTGCAGGATATTGTCAAATTCCTCTGGTCGTT 41
BSNT_05600 201 CCTCATTGTT----CTGCCGCTTGTACAGATTATACATGTTTCAGGGCAC 246
|.|.||.||| |||||| ||| .|.|..|.|||||.|..||.|||
BL04010___ywm 42 CTTGATCGTTTTTCCTGCCG--TGT--CGGTGCTTCATGTCTTGGGCCAC 87
BSNT_05600 247 AGCTTTATGGCTTTTATTTTTGGCGGAAAAGGATCGTTGGATATAGGCAT 296
|||...|||||..|..|.||.|||||.|||...|||.|.||.||.||.||
BL04010___ywm 88 AGCGCCATGGCGGTGTTGTTCGGCGGGAAATCTTCGCTTGAAATCGGGAT 137
BSNT_05600 297 GGGAAAAACGCTGCTTAAAATTGGACC----CATACGGTTCAGAACGATT 342
|||.||||...||||.|||||.||.|| ||.| ||||||...|.
BL04010___ywm 138 GGGCAAAAAATTGCTGAAAATCGGCCCTGTTCAAA----TCAGAAGTGTC 183
BSNT_05600 343 TATTTTATCGATTCTTTTTGCCGGTATGGGGAGTTGAAAAT-TGACAATC 391
||.||.||.|||||.||.|||...||.||||| ||.||||| .||.||.|
BL04010___ywm 184 TACTTCATGGATTCCTTCTGCAAATACGGGGA-TTTAAAATACGATAACC 232
BSNT_05600 392 GATTCTCACATGCACTCGTGTATGCAGGGGGCT-GCTTGTTTAACCTCAT 440
|.|||.|..||||..|..|.|||||.||.||.| || ||||||||.|.||
BL04010___ywm 233 GTTTCACGAATGCGATGATTTATGCTGGCGGATCGC-TGTTTAACTTAAT 281
BSNT_05600 441 CACGATTTTTGCAATCAATCTGCTGATTATACACAGTGTATTAAAGCCG- 489
..|.||.|||...||||||||||||||||| ||.|| ..||.|.|.|||
BL04010___ywm 282 GTCTATATTTATTATCAATCTGCTGATTAT-CAAAG-ACATCATACCCGA 329
BSNT_05600 490 -AATGTGTTTTTTTATCAGTTTGTCTATTTTTCTACGTATTATGTGTTTT 538
|||.|.|||||.||.||.|||||.||||||||.||.||||||||.||||
BL04010___ywm 330 AAATATTTTTTTCTACCAATTTGTTTATTTTTCAACCTATTATGTATTTT 379
BSNT_05600 539 TTGCCCTGCTGCCGGTCCGATATTCGGAGAAAAAGTCA----TCAGACGG 584
||||..||.|.||.||..|.|||||.| |||.||| ||.||.||
BL04010___ywm 380 TTGCTTTGATTCCCGTGAGGTATTCCG----AAAATCATCTTTCTGATGG 425
BSNT_05600 585 GCTGGCGATATACAAGGTGCTCCGTTACGGAGAGCGCTACGAAATCGATA 634
..||||.||.||.||.|||||..|.||.||||||...|||||.||..|||
BL04010___ywm 426 AATGGCAATTTATAAAGTGCTGAGGTATGGAGAGAAGTACGATATTAATA 475
BSNT_05600 635 AATAA 639
|.|.|
BL04010___ywm 476 ACTGA 480
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