Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05626 and BL03997

See Amino acid alignment / Visit BSNT_05626 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05626___atpH.1.5803.seq
#    -bsequence dna-align/BL03997___atpH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05626___atpH-BL03997___atpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05626___atpH-BL03997___atpH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05626___atpH
# 2: BL03997___atpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 576
# Identity:     395/576 (68.6%)
# Similarity:   395/576 (68.6%)
# Gaps:          51/576 ( 8.9%)
# Score: 1291.5
# 
#
#=======================================

BSNT_05626___      1 ATGAGTGGATCAGCTGTCTCTAAACGATATGCATCAGCTCTTTTTGATAT     50
                     |||||...||||||||||||.|||||.||.|||.|.|||||.|||||.||
BL03997___atp      1 ATGAGCCAATCAGCTGTCTCCAAACGCTACGCAGCCGCTCTGTTTGACAT     50

BSNT_05626___     51 AGCCAATGAGTCCGCTCAGCTG---AATCAAGTAGAAGAAGAGCTAACTG     97
                     .|||..|||.|||   .|||||   |||.||.|||||||||||||.||.|
BL03997___atp     51 TGCCCTTGAATCC---AAGCTGGTCAATGAAATAGAAGAAGAGCTGACCG     97

BSNT_05626___     98 TTGTAAAACAAG-TATTTCAAAATG---AAAAAGCGCTTAATGATGTGTT    143
                     |.|| .||.||| |||||   |.||   |.||||..||.||||..||..|
BL03997___atp     98 TCGT-TAAGAAGATATTT---ATTGAGCATAAAGACCTCAATGCCGTTCT    143

BSNT_05626___    144 GAACCATCCGAAGATGCCGGCTGCGAAGAAAAAAGAGCTGATCCAAAATG    193
                     |...|||||.||..||||.||||..|||||||   |||.|||...|||.|
BL03997___atp    144 GGGTCATCCTAAAGTGCCCGCTGAAAAGAAAA---AGCAGATTTTAAAAG    190

BSNT_05626___    194 ---CATTTGGCTCTTTGTC----ACAGTCCGTGCTTA-ATACGATTTTTC    235
                        |.||.||.||..|.||    .||||     |||| |||||.|||.||
BL03997___atp    191 ACTCGTTCGGATCCGTTTCGACTGCAGT-----CTTACATACGCTTTATC    235

BSNT_05626___    236 TTTTGATTGACCGCCATCGTGCCG-----CGATTGTGCTTGAGCTCACAG    280
                     ||.|..||||||||     .||||     |.||.||.|..||.|||.|.|
BL03997___atp    236 TTCTCGTTGACCGC-----AGCCGCACGTCAATCGTCCCGGATCTCGCGG    280

BSNT_05626___    281 ATGAGTTTATCAAACTCGCAAATGAGGCCCGTCAAACAGAAGACGCAATC    330
                     |.||.|.|.|||||.|.||.||...|..|||....||.|||||.||.|||
BL03997___atp    281 ACGAATATGTCAAAATGGCGAACCGGTTCCGCGGGACGGAAGATGCGATC    330

BSNT_05626___    331 GTATATTCAGTGAAACCGCTGACGGATGCTGAAATGTTAC-CATTATCAC    379
                     |||||.||.||.||||||||.|..||.|..||||| ||.| |.||.||.|
BL03997___atp    331 GTATACTCTGTAAAACCGCTCAGCGAAGAGGAAAT-TTCCTCTTTTTCTC    379

BSNT_05626___    380 AAGTGTTTGCAAAAAAGGCCGGAGTCGCTTCACTGAGAATCAGAAATGAA    429
                     ||||||||||||||.|.||.||.|.||||||||||.|..|||||||.|||
BL03997___atp    380 AAGTGTTTGCAAAAGAAGCAGGCGCCGCTTCACTGCGCGTCAGAAACGAA    429

BSNT_05626___    430 GTGCAGACGGATTTAATAGGCGGCATTAAAGTCCGCATTGGAAACCGGAT    479
                     |||.|..|||||.|.||.|||||..|.|||.|||||||.||.|||||.||
BL03997___atp    430 GTGAATCCGGATCTGATCGGCGGTGTGAAAATCCGCATCGGGAACCGCAT    479

BSNT_05626___    480 TTATGACGGCAGCGTAAGCGGGAAGCTTCAGCGCATTGAACGTCAATTAG    529
                     ||||||||||||.|||||.||.||||||.|.||.||.|||||||||||||
BL03997___atp    480 TTATGACGGCAGTGTAAGAGGAAAGCTTGACCGGATAGAACGTCAATTAG    529

BSNT_05626___    530 CCGGGGAAAATCGATAG---------    546
                     |.||.|||||||||.||         
BL03997___atp    530 CAGGCGAAAATCGAAAGAAGGGGTGA    555


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