Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05639 and BL03989
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05639___rpiB.1.5803.seq
# -bsequence dna-align/BL03989___ywlF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05639___rpiB-BL03989___ywlF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05639___rpiB-BL03989___ywlF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05639___rpiB
# 2: BL03989___ywlF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 463
# Identity: 345/463 (74.5%)
# Similarity: 345/463 (74.5%)
# Gaps: 26/463 ( 5.6%)
# Score: 1281.0
#
#
#=======================================
BSNT_05639___ 1 ATGAAAGTAGCCATTGCATCGGATCATGGCGGCGTTCACATTCGAAATGA 50
|||||||||..|||||||||.|||||.|||||..|..|.||..||||.||
BL03989___ywl 1 ATGAAAGTAATCATTGCATCAGATCACGGCGGAATCAATATCAGAAAAGA 50
BSNT_05639___ 51 AATCAAAGAGTTAATGGACGAATTGCAAATTGAATATATTGATATGGGCT 100
|||.|..|..||.||||||||||||.|.||.|||||....|||...||||
BL03989___ywl 51 AATTATGGCATTGATGGACGAATTGAACATCGAATACGAAGATTACGGCT 100
BSNT_05639___ 101 GTGACTGCGG--CAGCGGCTCTGTCGATTATCCGGATTATGCTTTTCCGG 148
|.||.||||| || ||.|||||.||.||.|||||||||||.|||||||
BL03989___ywl 101 GCGAATGCGGTTCA--GGATCTGTGGACTACCCGGATTATGCGTTTCCGG 148
BSNT_05639___ 149 TGGCCGAAAAAGTGGTTAGCGGCGAAGTTGACAGAGGCATTTTAATTTGC 198
|.||..|||||||||..|.|||.||||..|||||||||||||||||.|||
BL03989___ywl 149 TCGCGCAAAAAGTGGCGAACGGGGAAGCCGACAGAGGCATTTTAATATGC 198
BSNT_05639___ 199 GGGACAGGCATCGGCATGAGCATTTCCGCTAATAAAGTAAAAGGGATTCG 248
||.|||||.||||||||||||||||||||.||||||||||||||.||.||
BL03989___ywl 199 GGAACAGGAATCGGCATGAGCATTTCCGCCAATAAAGTAAAAGGCATCCG 248
BSNT_05639___ 249 CTGCGCGCTGGCGCACGATACCTTCAGCGCGAAGGCGACGAGGGAGCATA 298
||||||.||.|..|||||....||||||||.||...|||.||.|||||.|
BL03989___ywl 249 CTGCGCCCTTGTCCACGACGTTTTCAGCGCCAAAATGACAAGAGAGCACA 298
BSNT_05639___ 299 ATGACACAAACATCCTTGCGATGGGTGAACGGGTGATCGGACCTGGTTTG 348
|||||||.||..|.||||||||||||||||||||.|||||.||||||||.
BL03989___ywl 299 ATGACACGAATGTTCTTGCGATGGGTGAACGGGTCATCGGCCCTGGTTTA 348
BSNT_05639___ 349 GCTCGGGAAATCGCAAAAACCTGGCTGACTACTGAGTTT---ACCGGG-G 394
||..|.||.||.|||||....|||||.||.||||||||| .||||| |
BL03989___ywl 349 GCGAGAGAGATTGCAAAGGTTTGGCTTACGACTGAGTTTTCAGCCGGGCG 398
BSNT_05639___ 395 GAAGACACCAAACGCGTATTGGAAAAATCTCCGATTATGAAGA------- 437
| .||.||...||| ||.|||||||||.|||||||||||||
BL03989___ywl 399 G--CACGCCGTCCGC--ATCGGAAAAATCGCCGATTATGAAGACAAGCAT 444
BSNT_05639___ 438 GAAAAACCTGTAG 450
|||.||
BL03989___ywl 445 GAATAA------- 450
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